BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0115.p
         (279 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768...   142   2e-35

>gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768
           [Herbaspirillum seropedicae SmR1]
          Length = 720

 Score =  142 bits (359), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 146/300 (48%), Gaps = 52/300 (17%)

Query: 5   GLFFDGTSNNKYRDEPNQA--------HTNVVKLFNAHKDVKGEGYQKDSSCFRFYIPGV 56
           GLFFDGT NN    E  Q         H+NV +LF+A+ D        D+  FR Y+ GV
Sbjct: 48  GLFFDGTGNNDKWVEDGQTKNQRQRNKHSNVARLFDAYID------DPDNGFFRVYMQGV 101

Query: 57  GTRFPE-NQEWKETQE--GKAMGKGGQARILFGILQVYNAVYQAFNEGTRLFTDSELTAK 113
           GT F E    +K   +  G   G  G  RI +GI  + NAVY ++  G  LF+ +E    
Sbjct: 102 GTPFAEIGDTFKLGTDIGGSGFGYMGADRINWGITSLLNAVY-SYATGGSLFSGNEQRDL 160

Query: 114 LKSYTRDVESN-------------------YDKDYPQDERRKRWFTELRDELNDKLQTRR 154
           +   +  +  N                   Y    P+  RR   +     +L   +++ +
Sbjct: 161 VNLMSMQMLQNGNVNAMPPDWQIGEWTVPGYLTTAPEKVRRLAMYKTFMQKLATAVKSSQ 220

Query: 155 DMIIQPRIPKIRVAVFGFSRGAIEARSFCYWLHAALEEKS---TLAGMPIEINFLGLFDS 211
             ++Q     I V+VFGFSRGA EAR+ C+WLH           LAG+PI I FLG+FD+
Sbjct: 221 RKVVQ-----INVSVFGFSRGAAEARACCHWLHELFTPSGGAFELAGIPIRIGFLGVFDT 275

Query: 212 VASVGLPHSAAQTTPFRFIDGHFSWAAETLTPLPSLVKQTVHYIAAHEQRMNFPVTCVQG 271
           VA+VG+       TP  F  GH +WA +T + +P  V+Q  H++A HEQR +FP+    G
Sbjct: 276 VAAVGI----GDVTPVTF--GHMAWADKTQS-VPPAVEQCAHFVALHEQRASFPLESSTG 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 889,890
Number of extensions: 36681
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,222,130
Effective search space: 238315350
Effective search space used: 238315350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)