BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0113.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310175|ref|YP_003774267.1| transmembrane protein [Herbaspi...   256   1e-69
gi|300313160|ref|YP_003777252.1| threonine efflux protein [Herba...    92   6e-20

>gi|300310175|ref|YP_003774267.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score =  256 bits (655), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/184 (71%), Positives = 156/184 (84%)

Query: 134 SRLAGEKGVGLMALLIGFGVPLCNMAAVHALAHRSGNLFSELARNPLLIATGSGLLFALC 193
           +R+AGE+G GLMA+L+GFGVPLCN+AAVHALA ++ NL  ELA+NPLL+AT  GL F+  
Sbjct: 113 TRMAGEEGAGLMAILLGFGVPLCNIAAVHALAPKNSNLLRELAKNPLLVATAGGLTFSAL 172

Query: 194 GFTLPEVASAVLSRLGSASIALGLLMVGAGLRLAGIREDKLMTTYFTAIKLLAVPAVAYV 253
           G  LPEVA  VLSRLG+ASIALGLLMVGAGLRL+G++E K +  +F  IKL AVPAVA++
Sbjct: 173 GLHLPEVAGVVLSRLGAASIALGLLMVGAGLRLSGLKESKPVVGWFVFIKLFAVPAVAWL 232

Query: 254 LGRWFELPTLQLQIVVLFCSLPTASSCYILAARMGGNGPMTAFLISLGTLVSALTIPFWL 313
           +G+  +LP LQL+IVVLFCSLPTASS YILAARMGGNGP TAFLIS GTL+SALTIPFWL
Sbjct: 233 IGQHLQLPPLQLRIVVLFCSLPTASSAYILAARMGGNGPFTAFLISFGTLLSALTIPFWL 292

Query: 314 MLVH 317
            LVH
Sbjct: 293 ALVH 296


>gi|300313160|ref|YP_003777252.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 207

 Score = 92.0 bits (227), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/128 (55%), Positives = 85/128 (66%), Gaps = 2/128 (1%)

Query: 1   MVMQEFIMLAAAHWLALVSPGPDFLLLLRSALRHGRRNGVGASLGIACANGVYIVLALAG 60
           M   EF++LA+AH LAL SPGPDFLLL+R ALRHGR  G+ AS GIA ANG+YI LA+AG
Sbjct: 1   MFSSEFLLLASAHLLALASPGPDFLLLVRGALRHGRGYGLAASAGIAAANGLYIALAIAG 60

Query: 61  FSLLQRSPGALTVMKLLAAAYLAYIGWAFMQASRAGPPVMARDAGGIKHDGFLRGFAAGF 120
           FSLLQ SP  L  M+ LA+ YLA++GW FM+AS    P     + G +     RG  AGF
Sbjct: 61  FSLLQHSPALLVAMQWLASLYLAWLGWMFMRASLE--PAPWPGSAGRQAAAAWRGVGAGF 118

Query: 121 LDRPLFPH 128
           L   L P 
Sbjct: 119 LSALLNPK 126


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,098,146
Number of extensions: 50571
Number of successful extensions: 264
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 3
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)