BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0111.p (226 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 198 3e-52 gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 165 3e-42 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 162 3e-41 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 121 5e-29 gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 120 7e-29 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 198 bits (504), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 115/210 (54%), Positives = 141/210 (67%), Gaps = 12/210 (5%) Query: 10 PLLELRHVSKRFVKPLDSAARTSNLITRPF---GRVLHEEVVHAVDDVSLHINAGEVVGL 66 PL+E R VS+RF R + R G + HA+D V L + GEVVGL Sbjct: 7 PLIETRAVSRRF------GERRQGWLQRQLQARGWSRPPAITHALDKVDLKVLPGEVVGL 60 Query: 67 VGESGCGKSTLGRMAVGLHGLTEGRRLWRGEDLDALSPQQRRERQLAIQMIFQDPYASLN 126 VGESGCGKSTLGR+A GL ++G+ L G D +LS ++ E +L +QMIFQ+PYASLN Sbjct: 61 VGESGCGKSTLGRVACGLLDPSDGQVLVNGRDRASLSSREEAEARLQVQMIFQNPYASLN 120 Query: 127 PRLRVVDIVGEAPVVHG-ITGRREQQDYVADLLQRVGLSGDMLRRFPHQFSGGQRARVGI 185 PRLR+ IVGEA V+G + G + DYV L R GL + R+PHQFSGGQR R+GI Sbjct: 121 PRLRIDQIVGEAAQVNGKVEG--DLDDYVCQQLLRAGLDPALRDRYPHQFSGGQRQRIGI 178 Query: 186 ARALAVKPKFLVCDEAVAALDVSIQAQVLN 215 ARALAV+P+ LVCDEAVAALDVSIQAQ+LN Sbjct: 179 ARALAVQPQMLVCDEAVAALDVSIQAQILN 208 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 165 bits (417), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/196 (47%), Positives = 123/196 (62%), Gaps = 7/196 (3%) Query: 24 PLDSAARTSNLITR--PFGRVLHEEV--VHAVDDVSLHINAGEVVGLVGESGCGKSTLGR 79 PLD A +T+ P R L + + AV+DVSL + GE +GLVGESGCGKSTL + Sbjct: 10 PLDDIALELCALTKVYPLKRGLFQPPGQLKAVNDVSLRLYRGETLGLVGESGCGKSTLAK 69 Query: 80 MAVGLHGLTEGRRLWRGEDLDALSPQQRRERQLAIQMIFQDPYASLNPRLRVVDIVGEAP 139 M +GL T G L G+++D P +R+ IQ IFQDPY+SLNPR V +IVG Sbjct: 70 MLLGLLPPTSGNVLINGQEVD---PTERKAHARHIQPIFQDPYSSLNPRKTVAEIVGLPL 126 Query: 140 VVHGITGRREQQDYVADLLQRVGLSGDMLRRFPHQFSGGQRARVGIARALAVKPKFLVCD 199 +HGI E+ V D+L VG+ ++P+Q SGGQR RV IARAL ++P L+CD Sbjct: 127 KLHGIGNAAERNRQVKDILDLVGMPERTHAQYPNQLSGGQRQRVAIARALILRPDILICD 186 Query: 200 EAVAALDVSIQAQVLN 215 E +ALDVS+QAQ+LN Sbjct: 187 EPTSALDVSVQAQILN 202 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 162 bits (409), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 134/206 (65%), Gaps = 15/206 (7%) Query: 10 PLLELRHVSKRFVKPLDSAARTSNLITRPFGRVLHEEVVHAVDDVSLHINAGEVVGLVGE 69 P+L++R ++ RF ++ + FGRV + VHAV+ VS + AGE + +VGE Sbjct: 311 PILKVRDLTTRF-----------DVKSGIFGRV--RQRVHAVEKVSFDLYAGETLAIVGE 357 Query: 70 SGCGKSTLGRMAVGLHGLTEGRRLWRGEDLDALSPQQRRERQLAIQMIFQDPYASLNPRL 129 SGCGKST GR + L + G+ + G DL L + R+ + IQ IFQDP+ASL+PR+ Sbjct: 358 SGCGKSTTGRSLLRLVDIAGGKVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFASLDPRM 417 Query: 130 RVVDIVGEAPVVHGITGRREQQDYVADLLQRVGLSGDMLRRFPHQFSGGQRARVGIARAL 189 V + E +VHG+ + Q+ V LL RVGL+ + +R+PH+FSGGQR R+ IARAL Sbjct: 418 TVGYSIMEPMLVHGM--KEGAQERVDALLTRVGLTPEHGQRYPHEFSGGQRQRICIARAL 475 Query: 190 AVKPKFLVCDEAVAALDVSIQAQVLN 215 A+ PK ++ DE+V+ALDVSIQAQ++N Sbjct: 476 ALNPKIVIADESVSALDVSIQAQIVN 501 Score = 107 bits (267), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 100/184 (54%), Gaps = 13/184 (7%) Query: 45 EEVVHAVDDVSLHINAGEVVGLVGESGCGKS--TLGRMAVGLHG---LTEGRRLW---RG 96 E V AV D+S H++ GE + +VGESG GKS +L M + HG + G + G Sbjct: 21 ERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGGKIASGSMQFLRRSG 80 Query: 97 EDLD---ALSPQQRRERQLAIQMIFQDPYASLNPRLRVVDIVGEAPVVHGITGRREQQDY 153 + LD A + R R I MIFQ+P SLNP V + + E+ +H GR Q Sbjct: 81 QRLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGLGRAAAQAE 140 Query: 154 VADLLQ--RVGLSGDMLRRFPHQFSGGQRARVGIARALAVKPKFLVCDEAVAALDVSIQA 211 +L+ R+ + +L R PHQ SGG R RV IA AL+ KP L+ DE ALDV+IQA Sbjct: 141 ALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLIADEPTTALDVTIQA 200 Query: 212 QVLN 215 Q+L Sbjct: 201 QILQ 204 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 121 bits (303), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 77/173 (44%), Positives = 106/173 (61%), Gaps = 10/173 (5%) Query: 49 HAVDDVSLHINAGEVVGLVGESGCGKSTLGRMAVGLHGLTEGRRLWRGEDLDALSPQQRR 108 HAVD V L + GE +G+VGESG GKSTLG + L + + D + +R Sbjct: 291 HAVDGVDLQLRRGETLGIVGESGSGKSTLGMALLRLSAASVAGSIR----FDGVPISERP 346 Query: 109 ERQLA-----IQMIFQDPYASLNPRLRVVDIVGEAPVVHGITGRREQQ-DYVADLLQRVG 162 +R+L +Q++FQDP+ASL+PR V IVGE +H EQQ + L+ VG Sbjct: 347 QRELRPLRSRMQVVFQDPFASLSPRRTVEQIVGEGLELHHPDRSAEQQRQAIVAALEEVG 406 Query: 163 LSGDMLRRFPHQFSGGQRARVGIARALAVKPKFLVCDEAVAALDVSIQAQVLN 215 LS +L R+PH+FSGGQR R+ IARAL ++P+ L+ DE +ALDV++Q QVL Sbjct: 407 LSAAVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQ 459 Score = 104 bits (259), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 69/169 (40%), Positives = 92/169 (54%), Gaps = 5/169 (2%) Query: 51 VDDVSLHINAGEVVGLVGESGCGK--STLGRMAVGLHGLTEGRRLWRGEDLDALSPQQRR 108 VD VS I GE LVGESG GK S+L M + EG L G+D+ A S +Q + Sbjct: 21 VDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARYEGSILLDGQDVLAKSERQMQ 80 Query: 109 E-RQLAIQMIFQDPYASLNPRLRVVDIVGEAPVVHGITGRREQQDYVADLLQRVGLSGDM 167 + R + MIFQ+P +LNP + + + E + H R+ LL++ G+ Sbjct: 81 QVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGLNARDAARRAVALLEKTGIPEPA 140 Query: 168 LR--RFPHQFSGGQRARVGIARALAVKPKFLVCDEAVAALDVSIQAQVL 214 R +PH+ SGGQR R IA ALA KPK L+ DE ALDV+IQ Q+L Sbjct: 141 RRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQIL 189 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 120 bits (302), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 105/178 (58%), Gaps = 7/178 (3%) Query: 45 EEVVHAVDDVSLHINAGEVVGLVGESGCGKSTLGRMAVGLHG----LTEGRRLWRGEDLD 100 E V+ AVDDVSL + G ++GLVGESG GKS G +G+ + G L++G DL Sbjct: 19 EGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRIVGGEILFQGRDLV 78 Query: 101 ALSPQQRRERQLA-IQMIFQDPYASLNPRLRVVDIVGEAPVVHGITGRREQQDYVADLLQ 159 + RE Q I MIFQDP +LNP L+V + +A + H R++ ++ D L Sbjct: 79 RMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKVSRQQARELARDTLG 138 Query: 160 RVGLSG--DMLRRFPHQFSGGQRARVGIARALAVKPKFLVCDEAVAALDVSIQAQVLN 215 +G++ + L+ +PHQ SGG R RV IA A+ KP ++ DE ALDV+IQAQ+L+ Sbjct: 139 MMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTTALDVTIQAQILS 196 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 731,541 Number of extensions: 32700 Number of successful extensions: 409 Number of sequences better than 1.0e-08: 94 Number of HSP's gapped: 317 Number of HSP's successfully gapped: 99 Length of query: 226 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 144 Effective length of database: 1,231,600 Effective search space: 177350400 Effective search space used: 177350400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)