BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0110.p (279 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 348 3e-97 gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 246 2e-66 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 181 7e-47 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 179 2e-46 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 171 7e-44 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 348 bits (893), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 170/270 (62%), Positives = 204/270 (75%), Gaps = 1/270 (0%) Query: 1 MTGYSIMGLIDEPGKVAGGRILLNGRDLRSLPAEDMRRIRGNRIAMIFQDPMMTLNPVLR 60 +TG+SI+G++D PG++ GG IL GRDL + +R ++GNRIAMIFQDPMMTLNPVL+ Sbjct: 50 VTGFSILGMVDAPGRIVGGEILFQGRDLVRMDKTSLRELQGNRIAMIFQDPMMTLNPVLK 109 Query: 61 IDTQMIEAVRAHQDVSKDAALAMAREALVRVGIAAPDERLNAYPHQFSGGMRQRVAIAIA 120 ++ QM++AV AH VS+ A +AR+ L +GIA+P+ERL AYPHQ SGGMRQRVAIAIA Sbjct: 110 VEAQMVDAVLAHSKVSRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIA 169 Query: 121 LLNKPDLIICDEPTTALDVTIQGQILFEMQKLCRESGTALIWITHDLSVVAGLADTVSVM 180 +L+KPDLII DEPTTALDVTIQ QIL E+QKL R+ GTALIWITHDLSVVAGLAD V+VM Sbjct: 170 MLHKPDLIIADEPTTALDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVM 229 Query: 181 YAGRIVESGEVAQVLTRPRHPYTHGLIASAPSRNPRGQALRQIPGSTPSLLKLPSGCAFR 240 YAGRIVE G V VL P HPYT GLI S PS N RG LRQIPG TP+LL LP CAF Sbjct: 230 YAGRIVEQGSVDAVLDAPLHPYTQGLIGSLPSNNRRGARLRQIPGMTPNLLHLPPTCAFA 289 Query: 241 DRCAHAAIECTQTPE-TRIVDGRALRCFHP 269 RC + +C P + + +RC+HP Sbjct: 290 ARCERLSQQCLVAPAISEPLPAHRVRCYHP 319 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 246 bits (628), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 126/257 (49%), Positives = 172/257 (66%), Gaps = 2/257 (0%) Query: 1 MTGYSIMGLIDEPGKVAGGRILLNGRDLRSLPAEDMRRIRGNRIAMIFQDPMMTLNPVLR 60 MT ++MGL+ + + IL +G DL +P + + ++RG R+AMIFQ+PM +LNP Sbjct: 49 MTSLALMGLLPRKAQCSADHILFDGVDLHGMPDKQLMQLRGKRMAMIFQEPMTSLNPSYT 108 Query: 61 IDTQMIEAVRAHQDVSKDAALAMAREALVRVGIAAPDERLNAYPHQFSGGMRQRVAIAIA 120 + Q+ EA+ VS+ A A L R GI+ ++RL YPHQ SGG+RQRV IA++ Sbjct: 109 LGNQLCEAMLQQPGVSRAEARERALYLLHRTGISNAEDRLRQYPHQLSGGLRQRVMIAMS 168 Query: 121 LLNKPDLIICDEPTTALDVTIQGQILFEMQKLCRESGTALIWITHDLSVVAGLADTVSVM 180 L+ PDLII DEPTTALDVTIQ QIL +++L +E G A+I+ITHDL VV+ +AD V+VM Sbjct: 169 LMCNPDLIIADEPTTALDVTIQAQILRMIRELQQEFGAAVIFITHDLGVVSRIADRVAVM 228 Query: 181 YAGRIVESGEVAQVLTRPRHPYTHGLIASAPSRNPR--GQALRQIPGSTPSLLKLPSGCA 238 YAG++VE+ +VAQ+ +PRHPYT GL+ P R G L+ IPG PSL+ SGCA Sbjct: 229 YAGQVVETTDVAQLFAQPRHPYTQGLLNCIPVRGKTLPGSHLQAIPGVVPSLVGQVSGCA 288 Query: 239 FRDRCAHAAIECTQTPE 255 FR+RCA A C + P+ Sbjct: 289 FRNRCAKADSGCERDPQ 305 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 181 bits (459), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 104/245 (42%), Positives = 144/245 (58%), Gaps = 8/245 (3%) Query: 8 GLIDEPGKVAGGRILLNGRDLRSLPAEDMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMIE 67 GL+D + G++L+NGRD SL + + R ++ MIFQ+P +LNP LRID + E Sbjct: 77 GLLDP----SDGQVLVNGRDRASLSSREEAEAR-LQVQMIFQNPYASLNPRLRIDQIVGE 131 Query: 68 AVRAHQDVSKDAALAMAREALVRVGIAAPDERLNAYPHQFSGGMRQRVAIAIALLNKPDL 127 A + + V D + ++ L+R G+ P R + YPHQFSGG RQR+ IA AL +P + Sbjct: 132 AAQVNGKVEGDLDDYVCQQ-LLRAGLD-PALR-DRYPHQFSGGQRQRIGIARALAVQPQM 188 Query: 128 IICDEPTTALDVTIQGQILFEMQKLCRESGTALIWITHDLSVVAGLADTVSVMYAGRIVE 187 ++CDE ALDV+IQ QIL L E G ++I+HDL VV ++D V +MY GR+VE Sbjct: 189 LVCDEAVAALDVSIQAQILNLFMDLRAELGLTYLFISHDLGVVEHVSDRVVIMYLGRVVE 248 Query: 188 SGEVAQVLTRPRHPYTHGLIASAPSRNPRGQALRQIPGSTPSLLKLPSGCAFRDRCAHAA 247 S VA++ +P HPYT L+A P R + I G PS L P+GC F RC HA Sbjct: 249 SAPVAELFGQPNHPYTQALLAEVPRMGARKKEFTAIKGEIPSPLNPPTGCHFNPRCPHAT 308 Query: 248 IECTQ 252 C + Sbjct: 309 QRCRE 313 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 179 bits (455), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/196 (46%), Positives = 125/196 (63%) Query: 19 GRILLNGRDLRSLPAEDMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMIEAVRAHQDVSKD 78 G ILL+G+D+ + M+++RGN +AMIFQ+PM LNP+ I Q+ E + H+ ++ Sbjct: 62 GSILLDGQDVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGLNAR 121 Query: 79 AALAMAREALVRVGIAAPDERLNAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALD 138 A A L + GI P R +YPH+ SGG RQR IA+AL KP L+I DEPTTALD Sbjct: 122 DAARRAVALLEKTGIPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALD 181 Query: 139 VTIQGQILFEMQKLCRESGTALIWITHDLSVVAGLADTVSVMYAGRIVESGEVAQVLTRP 198 VTIQ QIL + +L RE A++ I+HDL++V AD V VM G++VES VA++ P Sbjct: 182 VTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAELFANP 241 Query: 199 RHPYTHGLIASAPSRN 214 + PYT L+ S P RN Sbjct: 242 QQPYTRKLLQSRPQRN 257 Score = 130 bits (326), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/202 (40%), Positives = 122/202 (60%), Gaps = 4/202 (1%) Query: 7 MGLIDEPGKVAGGRILLNGRDLRSLPAEDMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMI 66 M L+ G I +G + P ++R +R +R+ ++FQDP +L+P ++ + Sbjct: 321 MALLRLSAASVAGSIRFDGVPISERPQRELRPLR-SRMQVVFQDPFASLSPRRTVEQIVG 379 Query: 67 EAVRAHQ-DVSKDAALAMAREALVRVGIAAPDERLNAYPHQFSGGMRQRVAIAIALLNKP 125 E + H D S + AL VG++A L YPH+FSGG RQR+AIA AL+ +P Sbjct: 380 EGLELHHPDRSAEQQRQAIVAALEEVGLSAA--VLERYPHEFSGGQRQRIAIARALVLQP 437 Query: 126 DLIICDEPTTALDVTIQGQILFEMQKLCRESGTALIWITHDLSVVAGLADTVSVMYAGRI 185 +L++ DEPT+ALDVT+Q Q+L + +L R G A ++ITHDL+VV +A V VM G++ Sbjct: 438 ELLLLDEPTSALDVTVQQQVLQLLAELQRRHGLAYLFITHDLAVVQAMAHQVIVMKDGKV 497 Query: 186 VESGEVAQVLTRPRHPYTHGLI 207 VESG AQVL +P+ YT L+ Sbjct: 498 VESGATAQVLQQPQQEYTRRLV 519 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 171 bits (433), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 102/217 (47%), Positives = 129/217 (59%), Gaps = 6/217 (2%) Query: 1 MTGYSIMGLIDEPG-KVAGGRILLNGR-----DLRSLPAEDMRRIRGNRIAMIFQDPMMT 54 ++ +IM LI+ G K+A G + R DL MR IRG IAMIFQ+PM + Sbjct: 52 VSSLAIMRLIEHGGGKIASGSMQFLRRSGQRLDLAQADNATMRSIRGAEIAMIFQEPMTS 111 Query: 55 LNPVLRIDTQMIEAVRAHQDVSKDAALAMAREALVRVGIAAPDERLNAYPHQFSGGMRQR 114 LNPV + Q+ E++R HQ + + AA A A L V I L +PHQ SGGMRQR Sbjct: 112 LNPVFTVGEQIAESIRLHQGLGRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQR 171 Query: 115 VAIAIALLNKPDLIICDEPTTALDVTIQGQILFEMQKLCRESGTALIWITHDLSVVAGLA 174 V IA+AL KP L+I DEPTTALDVTIQ QIL ++ L +E +I+ITHD+ VVA +A Sbjct: 172 VMIAMALSCKPSLLIADEPTTALDVTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVA 231 Query: 175 DTVSVMYAGRIVESGEVAQVLTRPRHPYTHGLIASAP 211 D V VM G VE V + P HPYT L+A+ P Sbjct: 232 DRVVVMCRGEKVEENAVNPLFAAPAHPYTQSLLAAVP 268 Score = 157 bits (396), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 94/234 (40%), Positives = 137/234 (58%), Gaps = 13/234 (5%) Query: 2 TGYSIMGLIDEPGKVAGGRILLNGRDLRSLPAEDMRRIRGNRIAMIFQDPMMTLNPVLRI 61 TG S++ L+D +AGG++ GRDL LP ++R++R + I IFQDP +L+P + + Sbjct: 365 TGRSLLRLVD----IAGGKVEFGGRDLAQLPRSELRQLRRD-IQFIFQDPFASLDPRMTV 419 Query: 62 DTQMIEAVRAHQDVSKDAALAMAREALVRVGIAAPDERLNAYPHQFSGGMRQRVAIAIAL 121 ++E + H K+ A L RVG+ E YPH+FSGG RQR+ IA AL Sbjct: 420 GYSIMEPMLVHG--MKEGAQERVDALLTRVGLTP--EHGQRYPHEFSGGQRQRICIARAL 475 Query: 122 LNKPDLIICDEPTTALDVTIQGQILFEMQKLCRESGTALIWITHDLSVVAGLADTVSVMY 181 P ++I DE +ALDV+IQ QI+ M L E G + I+I+HD++VV ++ V+VMY Sbjct: 476 ALNPKIVIADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMY 535 Query: 182 AGRIVESGEVAQVLTRPRHPYTHGLIASAPSRNPRGQALRQIPGSTPSLLKLPS 235 G+IVE G + P+HPYT L+A+ P +P LRQ PG ++PS Sbjct: 536 LGQIVEIGPRRAIFENPQHPYTRKLMAAVPVADP---TLRQ-PGKKLLTDEIPS 585 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 925,825 Number of extensions: 38123 Number of successful extensions: 318 Number of sequences better than 1.0e-08: 88 Number of HSP's gapped: 304 Number of HSP's successfully gapped: 92 Length of query: 279 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 195 Effective length of database: 1,222,130 Effective search space: 238315350 Effective search space used: 238315350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)