BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0107.p (392 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310161|ref|YP_003774253.1| aminohydrolase [Herbaspirillum ... 369 e-103 gi|300310472|ref|YP_003774564.1| hippurate hydrolase [Herbaspiri... 315 4e-87 gi|300312475|ref|YP_003776567.1| metal-dependent amidase/aminoac... 311 7e-86 >gi|300310161|ref|YP_003774253.1| aminohydrolase [Herbaspirillum seropedicae SmR1] Length = 402 Score = 369 bits (947), Expect = e-103, Method: Compositional matrix adjust. Identities = 170/293 (58%), Positives = 215/293 (73%) Query: 13 ELQKIRRDIHAHPELSYEEQRTSDVVAQKLTEWGIPVVRGLGVTGVVGIIRSGDGPRAIG 72 +L IRR +HAHPEL +EE+RT+ VA L +G+ V +G GVV +R G RAI Sbjct: 16 DLVSIRRHLHAHPELRFEEKRTASFVADMLRSYGLTVAENIGGYGVVATLRKGKSTRAIA 75 Query: 73 LRADMDALPMPELNTFPHASKNAGKMHACGHDGHTAMLLGAAHHLSQHRDFNGTVYVIFQ 132 LRADMDALPM E N F H S AGKMHACGHDGHT MLLGAA LS+ +F+GTV+ +FQ Sbjct: 76 LRADMDALPMSEQNDFSHISTCAGKMHACGHDGHTTMLLGAARRLSREVEFDGTVHFVFQ 135 Query: 133 PAEEGGRGAERMIQDGLFEKYPMDAVFGMHNWPGMKAGTFGVTPGPMMASSNEFEVIVKG 192 PAEEGG GA MI+DGLFE++P DA+FG+HNWPG+ AG+FG+ PGP+MASSN F + G Sbjct: 136 PAEEGGAGARLMIEDGLFERFPADAIFGVHNWPGLPAGSFGLRPGPLMASSNTFSATLFG 195 Query: 193 KGSHAAQPHKSIDPVMTAVQIAQSWQTIVSRNANPNDPAVLSITQIHAGSATNVIPDNAS 252 +G+H AQPH+SIDPV+ A Q+ +WQ+IV+RN NPN AV+S+TQ+H G+A NVIP+ A+ Sbjct: 196 RGAHGAQPHRSIDPVLAAAQLTLAWQSIVTRNINPNHRAVISVTQLHTGTADNVIPEQAT 255 Query: 253 LIGTVRTFSTPVLDLIERRMREIAQHTAAAFDAEVDFNFQRNYPPLINHAKET 305 L GTVR+F LDLIE RM IA+ FD V F+F+R YP ++NH + T Sbjct: 256 LSGTVRSFDAETLDLIEHRMAAIAEAIGQMFDLRVQFHFERLYPAVVNHPEAT 308 >gi|300310472|ref|YP_003774564.1| hippurate hydrolase [Herbaspirillum seropedicae SmR1] Length = 403 Score = 315 bits (807), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 154/309 (49%), Positives = 202/309 (65%) Query: 5 DPITRFHAELQKIRRDIHAHPELSYEEQRTSDVVAQKLTEWGIPVVRGLGVTGVVGIIRS 64 D + + A +RRD+HAHPEL +EE RT+DVV ++L G V RGLG TGVV + Sbjct: 9 DTLHQHRAHWAGLRRDLHAHPELRFEEHRTADVVVRELQSLGYTVTRGLGGTGVVASLAG 68 Query: 65 GDGPRAIGLRADMDALPMPELNTFPHASKNAGKMHACGHDGHTAMLLGAAHHLSQHRDFN 124 D R I LRAD+DALP+ E N F HAS G MHACGHDGHT MLLGAA L Q Sbjct: 69 ADPQRGIVLRADLDALPIVEANDFAHASCTHGVMHACGHDGHTVMLLGAARLLKQGPMLP 128 Query: 125 GTVYVIFQPAEEGGRGAERMIQDGLFEKYPMDAVFGMHNWPGMKAGTFGVTPGPMMASSN 184 G+V+ +FQP EEGG GA +MI DGLFE++P +AVFGMHNWPG+ AG FG+ PGP+MA+ + Sbjct: 129 GSVHFVFQPGEEGGAGARKMIDDGLFEQFPTEAVFGMHNWPGLPAGQFGLRPGPIMAAGS 188 Query: 185 EFEVIVKGKGSHAAQPHKSIDPVMTAVQIAQSWQTIVSRNANPNDPAVLSITQIHAGSAT 244 ++ + GKG+HAAQPH +DP+ A + QTI +R+ +P DPAV+S+ HAG Sbjct: 189 RLKITITGKGAHAAQPHLGLDPIPLACSMVLQCQTIAARHKDPVDPAVISVCMFHAGDTD 248 Query: 245 NVIPDNASLIGTVRTFSTPVLDLIERRMREIAQHTAAAFDAEVDFNFQRNYPPLINHAKE 304 NVIPD A L GT+RT S+ + ++ +R + A A+ A+V+ F + YP IN E Sbjct: 249 NVIPDRAELRGTIRTLSSTLQQKLQEDIRRMCHALAEAYGAKVEVEFFQYYPATINTPAE 308 Query: 305 TAFAVEVLQ 313 T F V++ Sbjct: 309 TDFCERVIR 317 >gi|300312475|ref|YP_003776567.1| metal-dependent amidase/aminoacylase/carboxypeptidase [Herbaspirillum seropedicae SmR1] Length = 399 Score = 311 bits (796), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 150/303 (49%), Positives = 212/303 (69%), Gaps = 2/303 (0%) Query: 13 ELQKIRRDIHAHPELSYEEQRTSDVVAQKLTEWGIPVVRGLGVTGVVGIIRSGDGPRAIG 72 E+ IRR +H HPELS+EE T+ +VAQ+L +WG V R +G G+V +R G R+IG Sbjct: 21 EITAIRRHLHQHPELSFEEVDTAALVAQRLEQWGYAVTRHIGGNGLVATLRVGSSARSIG 80 Query: 73 LRADMDALPMPELNTFPHASKNAGKMHACGHDGHTAMLLGAAHHLSQHRDFNGTVYVIFQ 132 LRADMDALP+ E AS G MHACGHDGHTAMLLGAA HL++ R F+GT+ +IFQ Sbjct: 81 LRADMDALPIQEETGLDWASVKPGAMHACGHDGHTAMLLGAARHLARTRRFDGTLNLIFQ 140 Query: 133 PAEEGG--RGAERMIQDGLFEKYPMDAVFGMHNWPGMKAGTFGVTPGPMMASSNEFEVIV 190 PAEE G GA++M+ DGLFE++P +AVFG+HN PG++AGTF GP MA+ + ++ + Sbjct: 141 PAEEAGFDSGAQKMLADGLFERFPCEAVFGIHNHPGVEAGTFMFRSGPFMAACDTVKIRI 200 Query: 191 KGKGSHAAQPHKSIDPVMTAVQIAQSWQTIVSRNANPNDPAVLSITQIHAGSATNVIPDN 250 G+GSHAA+PH S+DPV+ A + + QT+VSRN +P D AV+++ +HAG A+NVIP+ Sbjct: 201 TGRGSHAARPHLSVDPVVVAASLVMALQTVVSRNIDPMDSAVVTVGSLHAGKASNVIPEF 260 Query: 251 ASLIGTVRTFSTPVLDLIERRMREIAQHTAAAFDAEVDFNFQRNYPPLINHAKETAFAVE 310 A++ +VR+F V +L+E+R+R + A ++ A+ + ++ R YP L+N ET FA Sbjct: 261 ATMELSVRSFKPEVRELLEQRIRALVSTHAQSYGAQAEIDYLRGYPVLVNSDAETDFARS 320 Query: 311 VLQ 313 V + Sbjct: 321 VAE 323 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.132 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,152,788 Number of extensions: 46233 Number of successful extensions: 116 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 3 Length of query: 392 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 305 Effective length of database: 1,207,925 Effective search space: 368417125 Effective search space used: 368417125 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)