BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0104.p
         (274 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313163|ref|YP_003777255.1| hypothetical protein Hsero_3869...   348   2e-97

>gi|300313163|ref|YP_003777255.1| hypothetical protein Hsero_3869
           [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score =  348 bits (894), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 171/264 (64%), Positives = 209/264 (79%), Gaps = 9/264 (3%)

Query: 4   VVTSSLPSSLRLAMLAGMVAILAACANTQKVHDPV------AKQVKLDQALALFSSNPAQ 57
           + +S +   L  A +AG  A+LA C+  Q    P+      AKQ +LDQALALFSSNPA 
Sbjct: 18  LASSCMRHILGAACVAG-AALLAGCSAQQPA--PLDASARQAKQARLDQALALFSSNPAG 74

Query: 58  GLPKEWEPLSFMRKKKATEYGLVRDGDRTVLRAFADKASSGLRHEVNIDPVKQPWLSWSW 117
           GLP  WEPL+F RKK  TEY L+ +  R+VL A+AD+ASSGLRH V+ID  K+PWLSWSW
Sbjct: 75  GLPAGWEPLTFTRKKIPTEYRLIDENGRSVLHAWADRASSGLRHPVDIDINKKPWLSWSW 134

Query: 118 KTSALIKTADNRFRDTEDSPVRIVLAFDGDKNKLSFMDTILFDTAKLLSGHDFPYATLMY 177
           KT+ LI TAD R+R+T+DSPVRIVLAFDGD +KLS MDTILFDTAKLL+GH+ PYATLMY
Sbjct: 135 KTAGLIPTADLRYRETDDSPVRIVLAFDGDHDKLSLMDTILFDTAKLLTGHELPYATLMY 194

Query: 178 IWENKAPKESVIANTRTGRIQMLVAESGAANVGQWVSYQRNIVDDYVKVYGEQPGRLIGV 237
           +W++KA   +VIAN RTGRIQM+VAESG A+VGQW  YQRN+ +DY +++GE+PGRL+GV
Sbjct: 195 VWDSKAEVGTVIANGRTGRIQMMVAESGPAHVGQWRRYQRNVAEDYERIFGEKPGRLVGV 254

Query: 238 GVLTDTDNTEGKVEAWYGDIRLLR 261
           GVLTDTDNT  K+EAWYGDIRL+R
Sbjct: 255 GVLTDTDNTSQKMEAWYGDIRLMR 278


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 856,172
Number of extensions: 34737
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,222,130
Effective search space: 232204700
Effective search space used: 232204700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)