BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0103.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313164|ref|YP_003777256.1| LysR family transcription regul...   289   6e-80
gi|300310701|ref|YP_003774793.1| LysR family transcription regul...   127   4e-31
gi|300309487|ref|YP_003773579.1| LysR family transcription regul...   113   8e-27
gi|300310375|ref|YP_003774467.1| LysR family transcription regul...    87   9e-19

>gi|300313164|ref|YP_003777256.1| LysR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  289 bits (740), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 135/153 (88%), Positives = 145/153 (94%)

Query: 1   MVGRSSVSSQPQLYNYEMLRGEPMCIVTGLDHHLATAQKVRLQELSTSSWILYSSNMPMR 60
           M+GRSSVSSQP LY+YEMLRGEPMCIV+G+DH LATAQKVRLQEL+ +SWILYSSNMPMR
Sbjct: 172 MIGRSSVSSQPNLYHYEMLRGEPMCIVSGIDHPLATAQKVRLQELAEASWILYSSNMPMR 231

Query: 61  IWIEHEFKLEGMKVPANVIETASPFVTVTLLAQSNMVAVMPLDIAHFFAAKQMLCILPVH 120
           IWIEHEFKLEG+KVP NVIETASPFVT+TLLAQSNMVAVMPLDIAHFFAAKQML ILPV+
Sbjct: 232 IWIEHEFKLEGVKVPGNVIETASPFVTITLLAQSNMVAVMPLDIAHFFAAKQMLGILPVN 291

Query: 121 LKTRIEHYGIVTRKNATLSSIGKMFINILRQQN 153
           LKTRIEHYGIVTRKN TLSS+ KMFI ILRQQN
Sbjct: 292 LKTRIEHYGIVTRKNTTLSSLAKMFIQILRQQN 324


>gi|300310701|ref|YP_003774793.1| LysR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 321

 Score =  127 bits (319), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 95/152 (62%), Gaps = 1/152 (0%)

Query: 1   MVGRSSVSSQPQLYNYEMLRGEPMCIVTGLDHHLATAQKVRLQELSTSSWILYSSNMPMR 60
           +V R+SVS+ P  Y+Y+ L  EP+ +V   +H     ++++L  L+   WI Y S+MP+ 
Sbjct: 167 LVARASVSAHPGKYHYQSLSEEPLSVVVSAEHPRPRGKELQLAALAGYRWITYPSHMPLH 226

Query: 61  IWIEHEFKLEGMKVPANVIETASPFVTVTLLAQ-SNMVAVMPLDIAHFFAAKQMLCILPV 119
             +E E  L G+ +PAN I TAS FVTV LL Q ++MV+++P  +A  F  + ML ILPV
Sbjct: 227 AVLEREMDLAGLSMPANTIATASTFVTVALLQQGADMVSILPTAVAEMFVQRGMLRILPV 286

Query: 120 HLKTRIEHYGIVTRKNATLSSIGKMFINILRQ 151
            L++  +  GIVTRK   LS  G+ F+ +LR+
Sbjct: 287 KLRSMSQTIGIVTRKGGQLSGAGQAFVQLLRE 318


>gi|300309487|ref|YP_003773579.1| LysR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score =  113 bits (282), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 94/147 (63%), Gaps = 1/147 (0%)

Query: 2   VGRSSVSSQPQLYNYEMLRGEPMCIVTGLDHHLATAQKVRLQELSTSSWILYSSNMPMRI 61
           + R+S+S +P LY+   +  E + +V  + H LA A  ++L +L+ S W++YS+NMPMR+
Sbjct: 158 ICRTSISQRPDLYDAFNIHEEELAVVASVQHPLADAPSLQLADLADSRWVVYSANMPMRL 217

Query: 62  WIEHEFKLEGMKVPANVIETASPFVTVTLLAQS-NMVAVMPLDIAHFFAAKQMLCILPVH 120
            +E EF    ++ P +++ET S F T++LL ++ + VA++ +D+A F     M  ILP+ 
Sbjct: 218 TLEREFHDADLRFPLHLMETTSAFTTLSLLQKNPHFVALLSVDVAQFCTRFGMTRILPLR 277

Query: 121 LKTRIEHYGIVTRKNATLSSIGKMFIN 147
           L TR E Y +VTR+   LS + ++F++
Sbjct: 278 LHTRSEPYQLVTRRGTMLSPVARLFLD 304


>gi|300310375|ref|YP_003774467.1| LysR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score = 86.7 bits (213), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 75/136 (55%)

Query: 16  YEMLRGEPMCIVTGLDHHLATAQKVRLQELSTSSWILYSSNMPMRIWIEHEFKLEGMKVP 75
           YE L  EP+C V  + H       + L +L++ +WI+      +R   +  F+ +G+  P
Sbjct: 172 YEELADEPICAVARVGHPFHARTDLSLADLASEAWIMAPKGSILRARCDQMFREQGLAPP 231

Query: 76  ANVIETASPFVTVTLLAQSNMVAVMPLDIAHFFAAKQMLCILPVHLKTRIEHYGIVTRKN 135
           +NV++T +     +LL Q++ +  MP ++A ++   +++ ILP+ L  R+  +GI+TR++
Sbjct: 232 SNVVDTTAILFITSLLQQTDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQD 291

Query: 136 ATLSSIGKMFINILRQ 151
             LS    + +  +R+
Sbjct: 292 NLLSPGANLVLQAIRE 307


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 416,986
Number of extensions: 13578
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 4
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)