BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0102.p (119 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313164|ref|YP_003777256.1| LysR family transcription regul... 212 7e-57 gi|300309487|ref|YP_003773579.1| LysR family transcription regul... 130 4e-32 gi|300310701|ref|YP_003774793.1| LysR family transcription regul... 120 4e-29 gi|300310375|ref|YP_003774467.1| LysR family transcription regul... 83 6e-18 gi|300310484|ref|YP_003774576.1| LysR family transcription regul... 60 5e-11 >gi|300313164|ref|YP_003777256.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 212 bits (539), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 103/118 (87%), Positives = 111/118 (94%) Query: 1 LPSVSAIVSRLRFKQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDR 60 LPSV +IVSRLRF+QVALLTALDEQGSLHKAAEVMHMTQPAATKALHEME ALGVTLFDR Sbjct: 20 LPSVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMEDALGVTLFDR 79 Query: 61 STRGIEATELGRCVIRYARLIQSDISNLRDELQGMLTGQGGRLSIGTIMGAAPDPXRA 118 S RGIEATELGRCVIRYARLIQSD++NLRDELQ M++G+GGRL+IGTIMGAAP RA Sbjct: 80 SPRGIEATELGRCVIRYARLIQSDVANLRDELQNMISGRGGRLAIGTIMGAAPFVTRA 137 >gi|300309487|ref|YP_003773579.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 130 bits (326), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 68/113 (60%), Positives = 90/113 (79%) Query: 1 LPSVSAIVSRLRFKQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDR 60 LPS+++I SRL +Q+ LL AL + GSL KAAE + +TQP A+KAL E+ES LGV LF R Sbjct: 5 LPSLASITSRLHLRQLRLLIALSDHGSLLKAAEQVALTQPGASKALQEIESTLGVQLFTR 64 Query: 61 STRGIEATELGRCVIRYARLIQSDISNLRDELQGMLTGQGGRLSIGTIMGAAP 113 + RG+E TELG CVIRYARLIQ+D+++LR+E+ ++ G GGRL++GTIMGA P Sbjct: 65 TNRGLEPTELGHCVIRYARLIQTDLTHLREEMLAIMQGHGGRLAVGTIMGAVP 117 >gi|300310701|ref|YP_003774793.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 120 bits (300), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 58/111 (52%), Positives = 82/111 (73%) Query: 3 SVSAIVSRLRFKQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDRST 62 S+++++SRLR KQ+ LL ALDE SLHKA+ + MTQ AA+K+L E+ES L LF+R+ Sbjct: 16 SLNSLLSRLRMKQLQLLIALDEHKSLHKASSALAMTQSAASKSLAELESMLDAQLFERTK 75 Query: 63 RGIEATELGRCVIRYARLIQSDISNLRDELQGMLTGQGGRLSIGTIMGAAP 113 G+ A G CVIRYARL+ +D+ +L +E+ + +GQGGRL+IG +MGA P Sbjct: 76 SGLIANPFGHCVIRYARLMATDLGSLCEEMAQIRSGQGGRLAIGAVMGAVP 126 >gi|300310375|ref|YP_003774467.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 82.8 bits (203), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 40/104 (38%), Positives = 69/104 (66%) Query: 9 SRLRFKQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDRSTRGIEAT 68 +RL+ +Q+ LL ALD+ ++H+AA ++MTQPAA+K L ++E LGV LF+R RG+ T Sbjct: 12 ARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVALFERLPRGMRPT 71 Query: 69 ELGRCVIRYARLIQSDISNLRDELQGMLTGQGGRLSIGTIMGAA 112 G +IR+AR+ + +S +++ + +G G++ +G I+ A Sbjct: 72 IYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGGILSPA 115 >gi|300310484|ref|YP_003774576.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 60.1 bits (144), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 58/98 (59%) Query: 11 LRFKQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMESALGVTLFDRSTRGIEATEL 70 +Q+ + A+ GSL +AA ++++TQPA ++A+ +E ++G LF+R T+G+ T L Sbjct: 3 FNLQQLEMFNAIVSAGSLGRAAALLNLTQPALSRAIKRLEESVGGALFERHTKGMHLTVL 62 Query: 71 GRCVIRYARLIQSDISNLRDELQGMLTGQGGRLSIGTI 108 G+ ++ +A +Q + R+EL + G + +G + Sbjct: 63 GQALLPHAMSLQREAQQAREELDAIRGLAKGVIKVGAV 100 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 340,714 Number of extensions: 11689 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 15 Length of query: 119 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 45 Effective length of database: 1,269,480 Effective search space: 57126600 Effective search space used: 57126600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)