BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0099.p (227 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313166|ref|YP_003777258.1| amino acid ABC transporter perm... 397 e-112 gi|300309585|ref|YP_003773677.1| amino acid ABC transporter perm... 269 2e-73 gi|300310827|ref|YP_003774919.1| amino acid ABC transporter perm... 238 3e-64 gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 237 6e-64 gi|300313536|ref|YP_003777628.1| amino acid ABC transporter perm... 194 4e-51 >gi|300313166|ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 397 bits (1020), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/227 (87%), Positives = 209/227 (92%) Query: 1 MHYTFDFMSVFVNWPRLLEGAWLTIQLSALSIVLGFVVGTLCAIAFKSKSWLLQALVKTY 60 M+YTFDFMSVF NW RLL GAWLTIQLSALSIVLGF VGTLCAIA KS+ L++ LV Y Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 VEIIRNTPLLVQVFLVYFGLASIGLRLTAETAAVIALTVNVGAYTAEIMRAGINSIHPGQ 120 VEIIRNTPLLVQVFLV+FGLASIG +L+AETAAVIALTVNVGAYT EIMRAGINSIHPGQ Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 IEAAECLGMSKFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAAECLGMS+FHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 QSETFRSFEVYVVIAVAYLALSFLFRAAFWLVGKTAFVRKRKLGTNL 227 QSETFRSFEVY VIAVAYL LSFLFR AFW + + AFVRKRKLGTNL Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 >gi|300309585|ref|YP_003773677.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 269 bits (687), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 134/227 (59%), Positives = 175/227 (77%) Query: 1 MHYTFDFMSVFVNWPRLLEGAWLTIQLSALSIVLGFVVGTLCAIAFKSKSWLLQALVKTY 60 MHY FDF SV +WP LL+GAW T+QLS L+ +LGFV+G CA+A S+ L+A V Y Sbjct: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 Query: 61 VEIIRNTPLLVQVFLVYFGLASIGLRLTAETAAVIALTVNVGAYTAEIMRAGINSIHPGQ 120 VE+IRNTPLL+Q + + FGL+S+G+ + A +AL +N+GAY+ EI+RAG+ SIH GQ Sbjct: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 Query: 121 IEAAECLGMSKFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 +EAA CLG+S V+WHVVLLPAVERV+P+LTSQF+L+MLASSI S + AEEL AN V Sbjct: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 Query: 181 QSETFRSFEVYVVIAVAYLALSFLFRAAFWLVGKTAFVRKRKLGTNL 227 QS+TFR+FEV++++ AYLAL+ L RA FWL+G+ F R+RKLGT L Sbjct: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLGTPL 227 >gi|300310827|ref|YP_003774919.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 238 bits (607), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 126/224 (56%), Positives = 169/224 (75%) Query: 1 MHYTFDFMSVFVNWPRLLEGAWLTIQLSALSIVLGFVVGTLCAIAFKSKSWLLQALVKTY 60 M Y F F +F + +LL GA LTI+LSALS++ G VG AI S + V +Y Sbjct: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 Query: 61 VEIIRNTPLLVQVFLVYFGLASIGLRLTAETAAVIALTVNVGAYTAEIMRAGINSIHPGQ 120 VE+IR+TP LVQ+F+++FGL SIG+++ A AA++A+TVN+GAY+ EI+RAG+ +IHP Q Sbjct: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 Query: 121 IEAAECLGMSKFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAA+ L M+++ V HVVL PA+E+VYP+L SQF L+MLASSI S ISAEELTATANL+ Sbjct: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 Query: 181 QSETFRSFEVYVVIAVAYLALSFLFRAAFWLVGKTAFVRKRKLG 224 +ETFRSFE+Y+V+ V Y+ L+ LFR AFWL+G F R+R+LG Sbjct: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLG 224 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 237 bits (604), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 111/217 (51%), Positives = 159/217 (73%) Query: 1 MHYTFDFMSVFVNWPRLLEGAWLTIQLSALSIVLGFVVGTLCAIAFKSKSWLLQALVKTY 60 M+++ DF + WP L GAWLT++++ L++++G +G A A S L Y Sbjct: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 Query: 61 VEIIRNTPLLVQVFLVYFGLASIGLRLTAETAAVIALTVNVGAYTAEIMRAGINSIHPGQ 120 +E++RNTP LVQ+FL+YFGLAS+G+R+ AAV+A+ +N+ AY AEI+RAG++S+ GQ Sbjct: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 Query: 121 IEAAECLGMSKFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAA+CLG+S + + WHV+L PA+ERVYP+LTSQF+L+M AS++ SQISAEELTA AN V Sbjct: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 Query: 181 QSETFRSFEVYVVIAVAYLALSFLFRAAFWLVGKTAF 217 QS+TFRS E Y+V+A YL L+ L + + +G+T F Sbjct: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIF 217 >gi|300313536|ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 223 Score = 194 bits (494), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 96/222 (43%), Positives = 147/222 (66%), Gaps = 1/222 (0%) Query: 1 MHYTFDFMSVFVNWPRLLEGAWLTIQLSALSIVLGFVVGTLCAIAFKSKSWLLQALVKTY 60 M Y FDF+S F +++G TI+L A+ VLG VG A A L+ +V Y Sbjct: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 Query: 61 VEIIRNTPLLVQVFLVYFGLASIGLRLTAETAAVIALTVNVGAYTAEIMRAGINSIHPGQ 120 VEIIRNTP LVQ+F ++FGL S+ + ++ TAA++A+ +N+GAY+ EI+RAG+ +I GQ Sbjct: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 Query: 121 IEAAECLGMSKFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAA+ L MS+ ++ H++L PA+++++P+L+SQ +++ML S++ SQI+ EEL+ AN + Sbjct: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QSETFRSFEVYVVIAVAYLALSFLFRAAFWLVGKTAFVRKRK 222 Q FR+FE Y+V YL L+ L R L+G F+ R+ Sbjct: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHY-FITARR 221 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 562,271 Number of extensions: 18446 Number of successful extensions: 155 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 20 Length of query: 227 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 145 Effective length of database: 1,231,600 Effective search space: 178582000 Effective search space used: 178582000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)