BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0098.p (216 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313167|ref|YP_003777259.1| amino acid ABC transporter perm... 400 e-113 gi|300313888|ref|YP_003777980.1| amino acid ABC transporter perm... 254 3e-69 gi|300310828|ref|YP_003774920.1| amino acid ABC transporter perm... 247 6e-67 gi|300309584|ref|YP_003773676.1| amino acid ABC transporter perm... 204 7e-54 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 125 2e-30 >gi|300313167|ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 400 bits (1027), Expect = e-113, Method: Compositional matrix adjust. Identities = 197/216 (91%), Positives = 206/216 (95%) Query: 1 VTSFTFLHVEYLLQAAVWTIVLSLVAFAFGGAAGFVIALWRVSPNKTLRAIASWYIQIVQ 60 + +F+FLHVEYLLQAAVWT+VLSLVAF FGG AGFVIALWRVSPN LR IAS YIQ+VQ Sbjct: 1 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQ 60 Query: 61 GIPLLVILFVAYFGLAIAGFKLSPLVAAGISFAVYCAAFLGEIWRGCIQAVPKTQWEASE 120 GIPLLVILFVAYFGLAIAGFKL+PLVAAGISFA+YCAAFLGEIWRGCIQAVPKTQWEASE Sbjct: 61 GIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASE 120 Query: 121 CLGFNRFEQLQKVILPQAFKIAIPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 CLGFNRFEQL KVILPQA KIA PPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF Sbjct: 121 CLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 Query: 181 QPFTVFGCVALIYFCLCYPLSALSKHFERKLNVSNR 216 QPFTVFGCVALIYFCLC+PLSALSKHFERKLNVS+R Sbjct: 181 QPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSHR 216 >gi|300313888|ref|YP_003777980.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 217 Score = 254 bits (649), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 120/213 (56%), Positives = 165/213 (77%) Query: 4 FTFLHVEYLLQAAVWTIVLSLVAFAFGGAAGFVIALWRVSPNKTLRAIASWYIQIVQGIP 63 F++ + +++Q+ WT+VLS +AF GGA GF++ L R+SP+ LR A +I+ VQGIP Sbjct: 5 FSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECVQGIP 64 Query: 64 LLVILFVAYFGLAIAGFKLSPLVAAGISFAVYCAAFLGEIWRGCIQAVPKTQWEASECLG 123 LL++LF+ YFGL++ G L LVAAG++ +Y +A+LG+IWRGC++A+P+ QWEASECL Sbjct: 65 LLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASECLS 124 Query: 124 FNRFEQLQKVILPQAFKIAIPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPF 183 R++ L+ VI+PQA ++++PPT+GF+VQ++K TSLASVIGFV+L+RAGQIINNS FQPF Sbjct: 125 LTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIFQPF 184 Query: 184 TVFGCVALIYFCLCYPLSALSKHFERKLNVSNR 216 VF V YF LCYPLS S ERKLNVS+R Sbjct: 185 LVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 >gi|300310828|ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 247 bits (630), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 118/215 (54%), Positives = 165/215 (76%) Query: 1 VTSFTFLHVEYLLQAAVWTIVLSLVAFAFGGAAGFVIALWRVSPNKTLRAIASWYIQIVQ 60 + F+F + +LL+AA WT++LS +AF GG AGF++AL R S LR +++ YIQI+Q Sbjct: 2 LAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQ 61 Query: 61 GIPLLVILFVAYFGLAIAGFKLSPLVAAGISFAVYCAAFLGEIWRGCIQAVPKTQWEASE 120 G P+L++LF++++GLAI G+KL P+VAA I+ +Y +A+LGEIWRGCI+AVP QWEAS Sbjct: 62 GTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAST 121 Query: 121 CLGFNRFEQLQKVILPQAFKIAIPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 L R++QL+ VILPQA +I++PPTVGF+VQIVKNTS+AS+IG V+L++AG++++N+TF Sbjct: 122 ALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATF 181 Query: 181 QPFTVFGCVALIYFCLCYPLSALSKHFERKLNVSN 215 QPF VF VA IYF CYPLS + ERK + Sbjct: 182 QPFLVFPIVAGIYFVFCYPLSRFAFALERKYHAHR 216 >gi|300309584|ref|YP_003773676.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 215 Score = 204 bits (518), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 95/178 (53%), Positives = 135/178 (75%), Gaps = 2/178 (1%) Query: 41 RVSPNKTLRAIASWYIQIVQGIPLLVILFVAYFGLAIAGF-KLSPLVAAGISFAVYCAAF 99 RVS + LR +A+ +IQ++QG PLLV++ V ++G A+AG + L AA + +Y +AF Sbjct: 38 RVSALRPLRRLAAAWIQLIQGTPLLVLMGVCFYGPALAGVGTVEALPAAATAMLIYTSAF 97 Query: 100 LGEIWRGCIQAVPKTQWEASECLGFNRFEQLQKVILPQAFKIAIPPTVGFMVQIVKNTSL 159 LGEIWRGCIQ+V K+QWEA+EC+G +R+++++ ++LPQA ++A PPTVGF VQ++KNTS+ Sbjct: 98 LGEIWRGCIQSVHKSQWEAAECIGLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSV 157 Query: 160 AS-VIGFVDLSRAGQIINNSTFQPFTVFGCVALIYFCLCYPLSALSKHFERKLNVSNR 216 AS VIGF +LS +++NNSTFQPF FG AL+YF +CYPLS S+ ERKL+ R Sbjct: 158 ASLVIGFAELSYNAKVLNNSTFQPFLYFGSAALLYFAMCYPLSRWSRALERKLHAHRR 215 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 125 bits (315), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 116/199 (58%) Query: 18 WTIVLSLVAFAFGGAAGFVIALWRVSPNKTLRAIASWYIQIVQGIPLLVILFVAYFGLAI 77 +T++ +L + G GFV+A+ R+ P + + A+ Y+ +++G PLLV +FV Y+GL Sbjct: 22 YTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGTPLLVQIFVVYYGLPG 81 Query: 78 AGFKLSPLVAAGISFAVYCAAFLGEIWRGCIQAVPKTQWEASECLGFNRFEQLQKVILPQ 137 G + SPL A ++ ++ +A+L E RG I V + QW A+ +G F+ L+ +I+PQ Sbjct: 82 MGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSVGLTYFQTLRYIIVPQ 141 Query: 138 AFKIAIPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFTVFGCVALIYFCLC 197 A +IA+P ++ ++K+TSL SVI +L A + + TF+P ++ A IY+ L Sbjct: 142 AVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRPLPLYVAAAAIYWMLS 201 Query: 198 YPLSALSKHFERKLNVSNR 216 AL E+KL +++ Sbjct: 202 LCFEALQHRLEKKLGKAHQ 220 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.331 0.142 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 591,083 Number of extensions: 21074 Number of successful extensions: 123 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 19 Length of query: 216 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 135 Effective length of database: 1,236,335 Effective search space: 166905225 Effective search space used: 166905225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 128 (53.9 bits)