BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0097.p (244 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 453 e-129 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 327 4e-91 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 318 2e-88 gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 296 1e-81 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 291 4e-80 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 453 bits (1166), Expect = e-129, Method: Compositional matrix adjust. Identities = 216/244 (88%), Positives = 233/244 (95%) Query: 1 MSAIVSINNLHKSFGTNKVLNGVSLDVQKGQMVAIIGRSGSGKSTLLRCLNGLERIDSGD 60 MSAIV I +LHKSFG+NKVLNGVSLDVQKGQMVAIIG+SGSGKSTLLRCLNGLE++D+GD Sbjct: 1 MSAIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD 60 Query: 61 INVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHVTVERNITLALTTIKKMATAEAKKI 120 I VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPH+TVERNITLALTTIKKM+T +AK I Sbjct: 61 IQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTI 120 Query: 121 AHNVLTLVGLEAKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTGEVL 180 AH VL LVGLE KK+AYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELT EVL Sbjct: 121 AHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 Query: 181 KVMEDLSKQGMTMVLVTHEMAFARKLADVLVFMHQGKVWEMGPPDELFTNPKTAELAKFV 240 KVMEDL++ GMTMVLVTHEMAFARKLADVLVFMHQG+VWE+GPPDELF++PKTAEL KFV Sbjct: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFV 240 Query: 241 SSEL 244 SS+L Sbjct: 241 SSDL 244 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 327 bits (839), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 157/239 (65%), Positives = 193/239 (80%), Gaps = 1/239 (0%) Query: 4 IVSINNLHKSFGTNKVLNGVSLDVQKGQMVAIIGRSGSGKSTLLRCLNGLERIDSGDINV 63 IV INN+ K FG+N+VLNG+SL V++GQ+VAIIGRSGSGKST+LRC+NGLE ID G I V Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHVTVERNITLALTTIKKMATAEAKKIAHN 123 GH + H + +L ELRK VG+VFQ YNLFPH+TVE NI L+ +KK AT A++ A Sbjct: 63 AGHKLTHKHE-HLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAIK 121 Query: 124 VLTLVGLEAKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTGEVLKVM 183 VL VGL+ K++AYPEQLSGGQ QRVAIARSLAM P++MLFDEVTSALDPELT EVLKVM Sbjct: 122 VLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVM 181 Query: 184 EDLSKQGMTMVLVTHEMAFARKLADVLVFMHQGKVWEMGPPDELFTNPKTAELAKFVSS 242 E+L++ GMTM+LVTHEM FAR++AD+ VFMHQGKVWE P +E F +P+T E +F+ + Sbjct: 182 EELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIGA 240 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 318 bits (816), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 154/244 (63%), Positives = 189/244 (77%), Gaps = 2/244 (0%) Query: 1 MSAIVSINNLHKSFGTNKVLNGVSLDVQKGQMVAIIGRSGSGKSTLLRCLNGLERIDSGD 60 M +V + +HK FG+N VL GVS V +G++VAIIG+SGSGKST LRC+N LE+ID+G Sbjct: 1 MHTVVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQ 60 Query: 61 INVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHVTVERNITLALTTIKKMATAEAKKI 120 I+VCGH +H L+LR LR+ VGIVFQ YNLFPH+TV +NITL T +K+M +A+ + Sbjct: 61 ISVCGHALHAAG-LDLRGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKRMPADQAQTL 119 Query: 121 AHNVLTLVGLEAKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTGEVL 180 A VL VGL K AYPEQLSGGQ QRVAIARSLA+ P+LMLFDEVTSALDPELTGEVL Sbjct: 120 AQQVLARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVTSALDPELTGEVL 179 Query: 181 KVMEDLSKQGMTMVLVTHEMAFARKLADVLVFMHQGKVWEMGPPDELFTNPKTAELAKFV 240 KVME ++ +GMTM+LVTHEMAFAR++AD ++FMHQG+VWE G P E+ P T EL FV Sbjct: 180 KVMEQMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWEQGGP-EILDAPVTPELRSFV 238 Query: 241 SSEL 244 + L Sbjct: 239 GTGL 242 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 296 bits (757), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 146/241 (60%), Positives = 192/241 (79%), Gaps = 2/241 (0%) Query: 4 IVSINNLHKSFGTNKVLNGVSLDVQKGQMVAIIGRSGSGKSTLLRCLNGLERIDSGDINV 63 IV ++ ++KSFG N+VL GVS +V +G+M+AIIG SGSGKST LRC++ LE IDSG I V Sbjct: 26 IVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIEV 85 Query: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHVTVERNITLALTTIKKMATAEAKKIAHN 123 G + P +++L +LR++VGIVFQSYNLFPH+ V N+ LAL +K+ AEA+++A Sbjct: 86 AGIRVDDP-QVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHVKQQDKAEARRVALA 144 Query: 124 VLTLVGLEAKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTGEVLKVM 183 L VGL+ K AYPEQLSGGQ QRVAIARSLAMAP++MLFDEVTSALDP+LTGEVL+VM Sbjct: 145 ALAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVM 204 Query: 184 EDLSKQGMTMVLVTHEMAFARKLADVLVFMHQGKVWEMGPPDELFTNPKTAELAKFVSSE 243 EDL+ GMTM+LVTHEM FA+++AD +++MHQG+VWE+G P E+ +P T EL F++++ Sbjct: 205 EDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVG-PGEMLDHPYTPELQAFLAAD 263 Query: 244 L 244 L Sbjct: 264 L 264 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 291 bits (744), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 139/238 (58%), Positives = 187/238 (78%), Gaps = 1/238 (0%) Query: 4 IVSINNLHKSFGTNKVLNGVSLDVQKGQMVAIIGRSGSGKSTLLRCLNGLERIDSGDINV 63 +++I+N+ K FG N+VL G+SLDV+ G+++AIIG+SGSGKSTLLRC+NGLE ID G+I+V Sbjct: 3 LIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 Query: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHVTVERNITLALTTIKKMATAEAKKIAHN 123 G + +L LR LR +VG++FQ +NLFPH++V RN+ +A +K ++ AEA K A Sbjct: 63 AGAKLG-ASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAKA 121 Query: 124 VLTLVGLEAKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTGEVLKVM 183 L VGL K +AYP+QLSGGQ QRVAIAR+L+M+P+ +L DE+TSALDPEL EVL VM Sbjct: 122 NLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVM 181 Query: 184 EDLSKQGMTMVLVTHEMAFARKLADVLVFMHQGKVWEMGPPDELFTNPKTAELAKFVS 241 L+K+GMT+++VTHEM FAR++ + LVFMHQGKV E+GPP+ELF NPKT EL +F+ Sbjct: 182 RGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 694,677 Number of extensions: 26305 Number of successful extensions: 514 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 281 Number of HSP's successfully gapped: 147 Length of query: 244 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 161 Effective length of database: 1,226,865 Effective search space: 197525265 Effective search space used: 197525265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)