BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0094.p
         (397 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313171|ref|YP_003777263.1| fumarylacetoacetate hydrolase f...   694   0.0  

>gi|300313171|ref|YP_003777263.1| fumarylacetoacetate hydrolase
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/398 (85%), Positives = 361/398 (90%), Gaps = 8/398 (2%)

Query: 1   MTHAFTIQAHLPEDHQQATLIGRIWQPNVGPVLVKVQADGVYDLTAVAATSSQLLELDNP 60
           M H F++QAHLPEDH QATLIGRIWQP VGPVLV++ ADG YDLT +AATSS+LLELDNP
Sbjct: 1   MAHTFSLQAHLPEDHAQATLIGRIWQPGVGPVLVRIDADGAYDLTLIAATSSELLELDNP 60

Query: 61  AAAVAQA-KAPRLASLEDLLANADVATRDTSRPWLLAPIDLQAVKASGVTFVASMLERVI 119
           AAAV  A    R+A+L++LL NAD A RDTSRPWLLAPIDLQAVKASGVTFVASMLERVI
Sbjct: 61  AAAVRSATNMTRIATLQELLDNADAAGRDTSRPWLLAPIDLQAVKASGVTFVASMLERVI 120

Query: 120 EEQARGDAGRAESVRKAITAXAGRAESVRKANLSSVVPGSDGAAKLKEVLLEQGVWSQYL 179
           EEQARGDAG+AESVRKAITA  G        NLSSVVPGS  AA+LKEVLL+QGVWSQYL
Sbjct: 121 EEQARGDAGKAESVRKAITAVIGD-------NLSSVVPGSPEAARLKEVLLDQGVWSQYL 173

Query: 180 EVGIGPDAEIFTKAQPLSSVGLGDEVGIHPKSVWNNPEPEIVLVVNSRGVTLGATLGNDV 239
           EVGIGPDAEIFTKAQP+SSVGLGDEVGIHPKS WNNPEPEIVL +NSRG  +GATLGNDV
Sbjct: 174 EVGIGPDAEIFTKAQPMSSVGLGDEVGIHPKSAWNNPEPEIVLAINSRGKVVGATLGNDV 233

Query: 240 NLRDFEGRSALLLGKAKDNNASCAVGPFIRLFDANFSIDDVRRAELTMRVDGTEGFTLKG 299
           NLRDFEGRSALLLGKAKDNNASCAVGPFIRLFDANFSIDDVRRAELTMRVDGTEGFTLKG
Sbjct: 234 NLRDFEGRSALLLGKAKDNNASCAVGPFIRLFDANFSIDDVRRAELTMRVDGTEGFTLKG 293

Query: 300 SSSMSMISRDPLNLVEHAIGPNHQYPDGLVLFLGTMFAPTQDRFGPGQGFTHQVADVVTI 359
           SSSMSMISRDPL LVEHAIGPNHQYPDGLVLFLGTMFAPTQDRFGPGQGFTHQVAD+VTI
Sbjct: 294 SSSMSMISRDPLQLVEHAIGPNHQYPDGLVLFLGTMFAPTQDRFGPGQGFTHQVADIVTI 353

Query: 360 ATPKLGALVNKVNFTDKVAPWTFGLTALLKNLAQRKLI 397
           +TPKLGALVN VNF+D+ APWTFGLTAL KNLA RKLI
Sbjct: 354 STPKLGALVNTVNFSDQTAPWTFGLTALFKNLADRKLI 391


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,204,601
Number of extensions: 49354
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 310
Effective length of database: 1,207,925
Effective search space: 374456750
Effective search space used: 374456750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)