BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0091.p
         (182 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313174|ref|YP_003777266.1| signal peptide protein [Herbasp...   253   7e-69

>gi|300313174|ref|YP_003777266.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 184

 Score =  253 bits (646), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 118/181 (65%), Positives = 143/181 (79%), Gaps = 1/181 (0%)

Query: 3   MKKFALKLTVAAVALIGLQTSSYAVDSVSVEAGAGSKVQMLRLGAQWDW-KNTAWWQSNG 61
           +K    K+  A VA I +Q+ SYA+D +S+E G G+  Q++RLGAQ++W  N  +WQSNG
Sbjct: 4   LKSLVAKIAFAGVAAIAVQSPSYAIDGMSLEYGTGNSTQLVRLGAQFNWGPNWNFWQSNG 63

Query: 62  THIGGYWDLTVAEWHQKRYNNTDSSKNFTDIGFTPVFRFQRDDKKGFYGEAGIGVHLFSS 121
           THIGGYWDL++A W    YNNT+ S N  D+G TPV RFQRDD KGFYGEAGIGVHLFS 
Sbjct: 64  THIGGYWDLSLANWRMNHYNNTNDSGNLVDLGLTPVLRFQRDDGKGFYGEAGIGVHLFSK 123

Query: 122 LYNNDTKKLSTAFQFGDHLGTGYVFANGLDVGLKLQHFSNGGIKQPNGGVNFAVLKAAYR 181
           LY N+ K LSTAFQFGDH+G GYVF+NGLD+G++LQHFSNGGIKQPNGGVNFAV + AY+
Sbjct: 124 LYRNNDKVLSTAFQFGDHIGAGYVFSNGLDLGIRLQHFSNGGIKQPNGGVNFAVARVAYK 183

Query: 182 F 182
           F
Sbjct: 184 F 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 601,267
Number of extensions: 26388
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,241,070
Effective search space: 126589140
Effective search space used: 126589140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)