BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0087.p
         (396 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313177|ref|YP_003777269.1| membrane-bound lytic murein tra...   580   e-166

>gi|300313177|ref|YP_003777269.1| membrane-bound lytic murein
           transglycosylase [Herbaspirillum seropedicae SmR1]
          Length = 410

 Score =  580 bits (1494), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 281/392 (71%), Positives = 331/392 (84%), Gaps = 6/392 (1%)

Query: 6   TSIRR-SLPALAVIVAVSLAACTTTPLPPARPTPSKPTTPVQPEGQ-AQGMQKSSFAAMP 63
           +S+RR S+PA+A+ VAV LAAC TTP+    P  S+P+   +P  Q    M+ +SF+ +P
Sbjct: 15  SSLRRLSVPAMAISVAVLLAACQTTPV--TTPGVSQPSP--RPTAQPGPAMRATSFSQLP 70

Query: 64  GWDRDALRDAWPAFLTSCQTLIRRSEWKNACTTARQVNADDEGAIRAFFESGFTPYKVFN 123
           GW+ D LR+AWPA  +SC  +IR+ EW+ AC  A+QVN  D G +R +FE+ FTPY+++N
Sbjct: 71  GWNNDDLREAWPAVQSSCSVMIRKPEWRAACAAAQQVNGSDLGLLRQYFETYFTPYQLYN 130

Query: 124 PDGSDTGLVTGYYEPLLRGSRKRGGPYQTPLYRAPDDLLTIDLASLYPELKNMRLRGRVV 183
            DG+DTGLVTGYYEPLLRGSR+R GPYQTPLY+APDDLLTID+AS+YPELKN+RLRG+VV
Sbjct: 131 QDGTDTGLVTGYYEPLLRGSRRRSGPYQTPLYQAPDDLLTIDMASVYPELKNLRLRGKVV 190

Query: 184 GNKVVPYFSRAELLQSGALAGKELVWVDDPVEAFFLQVQGSGRVQLTDSQETVRLAYADQ 243
           G KVVPY +RAEL+Q  ALAGKE+VWVDDPVEAFFLQVQGSGRV L +S+ET+RLAYADQ
Sbjct: 191 GRKVVPYPTRAELMQGNALAGKEIVWVDDPVEAFFLQVQGSGRVYLPESRETIRLAYADQ 250

Query: 244 NGYPYKSIGRYLVDKGEMTLSQASAQGIKAWVIANPSRQNELLNVNPSYIFFKEEKITDP 303
           NG PYKSIGRYLVDKGEM LSQASAQ IKAWV ANP+R+ ELLN NPSY+FFKEEK+ DP
Sbjct: 251 NGRPYKSIGRYLVDKGEMELSQASAQNIKAWVQANPARKEELLNANPSYVFFKEEKLPDP 310

Query: 304 SKGPKGAMGLPLTAQRSIAVDPQHIPLGAPVFLATTQPNSDAVLQRLVLAQDTGGAIRGA 363
           SKGPKGA G+PLT QRSIA+DPQH+PLGAPVFLATT PNSD  LQRLV+AQDTGGAIRG 
Sbjct: 311 SKGPKGAQGIPLTPQRSIAIDPQHVPLGAPVFLATTLPNSDRPLQRLVVAQDTGGAIRGV 370

Query: 364 VRADYFWGFGNEAGEKAGGMKQRGMMWVLLPN 395
           VRADYFWGFG+EA ++AG MKQRGMMWVLLP 
Sbjct: 371 VRADYFWGFGDEAEDRAGSMKQRGMMWVLLPK 402


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,236,377
Number of extensions: 54174
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,207,925
Effective search space: 373248825
Effective search space used: 373248825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)