BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0085.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313178|ref|YP_003777270.1| Mg2+/Co2+ transport regulator o...   247   4e-67

>gi|300313178|ref|YP_003777270.1| Mg2+/Co2+ transport regulator of
           protein [Herbaspirillum seropedicae SmR1]
          Length = 124

 Score =  247 bits (630), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 115/124 (92%), Positives = 120/124 (96%)

Query: 39  MATYELTVTVKTQYLEEQSDPARSHYVFAYAITIVNSGQVPAQLISRHWVITDANNHTEE 98
           MA YE TVTVKTQYLEEQSDP+RSHYVFAYAITIVN+G VPAQLISRHWVITDANNH EE
Sbjct: 1   MAAYEFTVTVKTQYLEEQSDPSRSHYVFAYAITIVNTGTVPAQLISRHWVITDANNHVEE 60

Query: 99  VRGLGVVGHQPFLQPGEQFEYTSGTSLQTPQGSMHGEYFCVAEDGEQFDVKIPEFILSLP 158
           VRGLGVVGHQPFLQPGEQFEYTSGTSL+TPQGSMHGEYFCVAEDGEQFDV+IPEF+LSLP
Sbjct: 61  VRGLGVVGHQPFLQPGEQFEYTSGTSLKTPQGSMHGEYFCVAEDGEQFDVRIPEFVLSLP 120

Query: 159 RTLH 162
           RTLH
Sbjct: 121 RTLH 124


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 512,292
Number of extensions: 19600
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)