BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0083.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase [H...   286   7e-79
gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase [H...    82   2e-17

>gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score =  286 bits (732), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 136/176 (77%), Positives = 156/176 (88%)

Query: 2   LDNIKAAIIDLDGTMLDTAPDFHVAVNRMRADLGLGPLAMQTIVNFVGKGSENLMRRVLA 61
           L NIKAAIIDLDGTMLDTA DFHVAVNRMR DLGL PL+ +TIVNFVGKG+ENL+RRVLA
Sbjct: 4   LTNIKAAIIDLDGTMLDTAADFHVAVNRMRDDLGLTPLSQETIVNFVGKGTENLIRRVLA 63

Query: 62  VDYDEDGVAQRFEEALASYQEHYLAINGDHATLYPNVIEGLQALKAKGLRLACVTNKPIA 121
           VDY ED  AQ F++ALA+  EHYLAINGD+++LYP V+EGLQAL+ KGLRLACVTNKP+A
Sbjct: 64  VDYAEDEAAQYFQQALAACTEHYLAINGDYSSLYPGVLEGLQALRNKGLRLACVTNKPLA 123

Query: 122 FTLPLMDKKGLYPYFDVIYGGDSLPKKKPDPLPLLQVCADFALQPAQVVAIGDSSN 177
           F +PL+ KKGL  +F+++YGGDS PKKKPDP+PLLQVC DFAL PAQVVAIGDSSN
Sbjct: 124 FAVPLLQKKGLRDFFEIVYGGDSFPKKKPDPMPLLQVCQDFALAPAQVVAIGDSSN 179


>gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score = 82.4 bits (202), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 78/169 (46%), Gaps = 5/169 (2%)

Query: 6   KAAIIDLDGTMLDTAPDFHVAVNRMRADLGLGPLAMQTIVNFVGKGSENLMRRVLAVDYD 65
           +A + DLDGT+ DTAPD   A N +R   GL     + +      G+  L+   L +   
Sbjct: 7   RAILFDLDGTLADTAPDLAAAANFLRQQRGLEDAPYEQLRPVASAGARGLIGAALGIRPG 66

Query: 66  EDGVAQRFEEALASYQEHYLAINGDHATLYPNVIEGLQALKAKGLRLACVTNKPIAFTLP 125
           ED     +EE    + + Y A    H+ L+  + E L  L+A+G+    VTNK   FT  
Sbjct: 67  ED----EYEELRVRFLDRYQANMTTHSRLFDGIPELLVQLEARGIAWGIVTNKAARFTDV 122

Query: 126 LMDKKGLYPYFDVIYGGDSLPKKKPDPLPLLQVCADFALQPAQVVAIGD 174
           L  + GL  +   I  GD+ P  KP P PLL+      L P     +GD
Sbjct: 123 LAPQIGLG-HAGCIVSGDTTPHSKPHPAPLLEAARRLQLTPEDCWYVGD 170


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 555,461
Number of extensions: 20531
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)