BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0082.p
         (503 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313182|ref|YP_003777274.1| anthranilate synthase component...   937   0.0  
gi|300310855|ref|YP_003774947.1| para-aminobenzoate synthetase c...   137   2e-33

>gi|300313182|ref|YP_003777274.1| anthranilate synthase component I
           protein [Herbaspirillum seropedicae SmR1]
          Length = 498

 Score =  937 bits (2422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/503 (91%), Positives = 479/503 (95%), Gaps = 5/503 (0%)

Query: 1   MTELEFKSLAAQGYNRIPLIAEAFADLETPLTLYLKLAQTQNAGKNTFLLESVVGGERFG 60
           MTELEFKSLA +GYNRIPLIAEAFADLETPLTLYLKLAQ+ + GKNTFLLESVVGGERFG
Sbjct: 1   MTELEFKSLATEGYNRIPLIAEAFADLETPLTLYLKLAQSHHTGKNTFLLESVVGGERFG 60

Query: 61  RYSFIGLPATTKXRSFGNKIEVLKNDKVIESLEGNALEFIAEFQSRYKVAIRPGMPRFCG 120
           RYSFIGLPA+TK R  G +IEVLKND VIE+ EGNALEFIA++QSR+KVAIRPGMPRFCG
Sbjct: 61  RYSFIGLPASTKIRCSGKQIEVLKNDVVIETAEGNALEFIAQYQSRFKVAIRPGMPRFCG 120

Query: 121 GLAGYFGYDAVRYIEKRLADSAPKDDLGLPDIQLLVTEELAVIDNLSGKLYLIVYTDPSQ 180
           GLAGYFGYDAVRYIEKRL DSAPKD LGLPDIQLL+TEELAVIDNLSGKLYLIVY DP+Q
Sbjct: 121 GLAGYFGYDAVRYIEKRLEDSAPKDTLGLPDIQLLLTEELAVIDNLSGKLYLIVYADPTQ 180

Query: 181 PEAFSKGRQRLKDLRASLRRAADAPVTSGSVRTETIREFPKDDYLKAVAKAKEYVMAGDL 240
           PEAFS+GRQRL+DLRA LRR ADAPVT+GSVRTETIREFPKD+YLKAVA+AKEYVMAGDL
Sbjct: 181 PEAFSRGRQRLRDLRAMLRRPADAPVTTGSVRTETIREFPKDEYLKAVARAKEYVMAGDL 240

Query: 241 MQVQIGQRLKKSYVDSPLMLYRALRSLNPSPYMYFYNFGDMQIVGASPEILVRNETIGQT 300
           MQVQIGQRLKKSYVDSPLMLYRALRSLNPSPYMYFYNFGDMQIVGASPEILVRNE+I   
Sbjct: 241 MQVQIGQRLKKSYVDSPLMLYRALRSLNPSPYMYFYNFGDMQIVGASPEILVRNESI--- 297

Query: 301 SDGEAQKKITIRPLAGTRPRGSTPERDAQLATELLADPKEIAEHVMLIDLARNDIGRIAV 360
             GE QKKITIRPLAGTRPRGST ERD QLA ELLADPKEIAEHVMLIDLARNDIGRIA 
Sbjct: 298 --GEGQKKITIRPLAGTRPRGSTIERDEQLARELLADPKEIAEHVMLIDLARNDIGRIAT 355

Query: 361 TGSVKVTDQMVIEKYSHVQHIVSNVEGLLKPGLSNLDVLKATFPAGTLSGAPKVRAMEII 420
           TGSVKVTDQMVIEKYSHVQHIVSNVEG+LKPG+SNLDVLKATFPAGTLSGAPKVRAMEII
Sbjct: 356 TGSVKVTDQMVIEKYSHVQHIVSNVEGILKPGMSNLDVLKATFPAGTLSGAPKVRAMEII 415

Query: 421 DELEPTKRGIYGGACGYLSFGGEMDVAIAIRTGVIKDGTLYVQAAAGIVADSVPEMEWEE 480
           DELEPTKRGIYGGACGYLSFGGEMDVAIAIRTGVIKDGTLYVQAAAGIVADSVPEMEWEE
Sbjct: 416 DELEPTKRGIYGGACGYLSFGGEMDVAIAIRTGVIKDGTLYVQAAAGIVADSVPEMEWEE 475

Query: 481 TENKARAVLRAAEQVQDGLDGEI 503
           TENKARAVLRAAEQVQDGLDGEI
Sbjct: 476 TENKARAVLRAAEQVQDGLDGEI 498


>gi|300310855|ref|YP_003774947.1| para-aminobenzoate synthetase
           component I protein [Herbaspirillum seropedicae SmR1]
          Length = 660

 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 143/282 (50%), Gaps = 32/282 (11%)

Query: 224 YLKAVAKAKEYVMAGDLMQVQIGQRLKKSYVDSPLMLYRALRSLNPSPYMYFYN--FGDM 281
           +  A+A+ ++Y+ AGD  QV    RL        + LYR LR+  P PY        G M
Sbjct: 174 FSAAIARIRDYIAAGDTYQVNYTYRLHGDVHGDAIGLYRRLRARQPVPYGALVRDELGGM 233

Query: 282 QIVGASPEILVRNETIGQTSDGEAQKKITIRPLAGTRPRGSTPER------DAQLATELL 335
            ++  SPE+ V ++          Q  +  +P+ GT  R   PE+      +AQ A  L 
Sbjct: 234 -VLSCSPELFVSHQ----------QGVLKAKPMKGT-ARALPPEQEGAETVNAQRALALA 281

Query: 336 ADPKEIAEHVMLIDLARNDIGRIAVTGSVKVTDQMVIEKYSHVQHIVSNVEGLLKPGLSN 395
           AD K  AE++M++DL RND+GR+AV GSV+V     + +Y  V  + S +   L+   + 
Sbjct: 282 ADEKNRAENLMIVDLLRNDLGRVAVPGSVQVPHLFDVRRYGQVLQMTSTIRARLREHATL 341

Query: 396 LDVLKATFPAGTLSGAPKVRAMEIIDELEPTKRGIYGGACGYLSFG-------GEMDVAI 448
            D + A +P G+++GAPK R MEII ELE   RG+Y GA G+           G+  +++
Sbjct: 342 ADTINALYPCGSITGAPKRRTMEIIHELESEPRGLYTGAIGWFDAPRPGGPAIGDFCLSV 401

Query: 449 AIRTGVIKDGTLYVQAA-----AGIVADSVPEMEWEETENKA 485
            IRT  ++     ++ A     AGIV DS    E+ E + K+
Sbjct: 402 PIRTLELQAPHAGLRKAVMGVGAGIVHDSQAAAEFAECQLKS 443


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,515,653
Number of extensions: 64584
Number of successful extensions: 166
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 2
Length of query: 503
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 414
Effective length of database: 1,198,455
Effective search space: 496160370
Effective search space used: 496160370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)