BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0081.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313183|ref|YP_003777275.1| anthranilate synthase glutamine...   374   e-105
gi|300310710|ref|YP_003774802.1| carbamoyl-phosphate synthase sm...    59   3e-10

>gi|300313183|ref|YP_003777275.1| anthranilate synthase glutamine
           amido-transferase [Herbaspirillum seropedicae SmR1]
          Length = 191

 Score =  374 bits (960), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 175/189 (92%), Positives = 186/189 (98%)

Query: 1   MLLMIDNYDSFTYNIVQYFGELGEEVLTVRNDEITLAEIEKLNPERICLSPGPCSPKEAG 60
           MLLMIDNYDSFTYN+VQYFGELGEEVLT+RNDEITL +I KLNPERICLSPGPCSPKEAG
Sbjct: 1   MLLMIDNYDSFTYNLVQYFGELGEEVLTIRNDEITLDDIRKLNPERICLSPGPCSPKEAG 60

Query: 61  ICIDLLKHFSGKLPILGVCLGHQAIGEAFGGNVVRAKQVMHGKTSKIAHTGVGVFKDIPS 120
           IC+DLLK FSGKLPILGVCLGHQAIGEAFGGN++RAKQVMHGKTSKIAHTGVGVF+D+PS
Sbjct: 61  ICVDLLKEFSGKLPILGVCLGHQAIGEAFGGNIIRAKQVMHGKTSKIAHTGVGVFQDLPS 120

Query: 121 PYTVIRYHSLAIERASLPDCLEVTAWTDDGEIMGVRHKEFDLQGVQFHPESILSEHGHAL 180
           PYTVIRYHSLAIERA+LPDCLEVTAWTDDGEIMGVRHKEFDLQGVQFHPESILSEHGHAL
Sbjct: 121 PYTVIRYHSLAIERATLPDCLEVTAWTDDGEIMGVRHKEFDLQGVQFHPESILSEHGHAL 180

Query: 181 LKNFLTGTA 189
           LKNFL+G+A
Sbjct: 181 LKNFLSGSA 189


>gi|300310710|ref|YP_003774802.1| carbamoyl-phosphate synthase small
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score = 58.5 bits (140), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 13/173 (7%)

Query: 13  YNIVQYFGELGEEVLTVRNDEITLAEIEKLNPERICLSPGPCSPKEAGICIDLLKHFSGK 72
           YNI++   E G +V TV   + T AE   LNP+ I LS GP  P+     I   K    +
Sbjct: 210 YNILRMLAERGCKV-TVLPAQATAAEALALNPDGIFLSNGPGDPEPCDYAIAASKELIER 268

Query: 73  -LPILGVCLGHQAIGEAFGGNVVRAKQVMHGKTSKIAHTGVGVFKDIPSPYTVI--RYHS 129
            +P  G+CLGHQ +  A G   ++ K   HG    +        +D+ S   +I  + H 
Sbjct: 269 GIPTFGICLGHQIMALASGAKTLKMKFGHHGANHPV--------QDLDSKQVMITSQNHG 320

Query: 130 LAIERASLPDCLEVTAWT-DDGEIMGVRHKEFDLQGVQFHPESILSEHGHALL 181
            A+++A+LP    VT  +  DG + G    +      Q HPE+    H  A L
Sbjct: 321 FAVDQATLPANCRVTHVSLFDGSLQGFERTDKPAFCFQGHPEASPGPHDIAPL 373


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 613,162
Number of extensions: 25145
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)