BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0079.p
         (210 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312440|ref|YP_003776532.1| threonine efflux protein [Herba...   119   2e-28
gi|300311201|ref|YP_003775293.1| threonine efflux protein [Herba...    70   1e-13
gi|300314064|ref|YP_003778156.1| threonine efflux protein [Herba...    66   2e-12

>gi|300312440|ref|YP_003776532.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score =  119 bits (298), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 3/206 (1%)

Query: 6   DLLIFALAALVLVLTPGPNMMYCVSRSICQGRAAGMISLLGVAAGFVVHMLAATFGLTAL 65
           DL++F LAA+ L L PGP+ +Y ++R I QGR AG+++  G  +G V H L A  G  AL
Sbjct: 3   DLILFLLAAMTLTLAPGPDNLYVLTRGIAQGRKAGLVAAAGFCSGLVFHTLLAVLGFAAL 62

Query: 66  FLAVPLAYDLIKYLGAAYLLWMAWNAIKPGGASPFQTRDLPHDSNATLFRM---GFLTNL 122
             A P AY  ++Y GAAYL ++    ++   A      D    +   L R+     L N+
Sbjct: 63  IKAYPPAYHALQYAGAAYLAYLGVRTLRSASAGLALAADGQGAAAVPLRRIYWQSVLANM 122

Query: 123 LNPKAAMFYMSFLPQFIHAEHGHVMLQSLTLGVTQIAVSFTVNGLLILTASAIAGFFSSN 182
           LNPK  +F+++FLPQF+  E GH  LQ L L +  I  +F +   + L + A+  +F   
Sbjct: 123 LNPKVTLFFIAFLPQFVQREAGHEALQMLVLALVFIVQAFAIFSAIALFSGAVGAYFRRR 182

Query: 183 PGWMRAQRYLMGLTLGALAFRLALDQ 208
                    L G     L  R+AL +
Sbjct: 183 ASASVHLNRLAGCAFIGLGIRMALPE 208


>gi|300311201|ref|YP_003775293.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score = 70.1 bits (170), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 12/195 (6%)

Query: 10  FALAALVLVLTPGPNMMYCVSRSICQGRAAGMISLLGVAAGFVVHMLAATFGLTALFLAV 69
           F  AA V+ ++PG   +  +S  +  G      ++LG+    VV ++ A  G+ +L +A 
Sbjct: 9   FFAAACVIAISPGSGAVLSMSHGLNYGVRRTSATILGLEIALVVILIIAGAGVGSLLVAS 68

Query: 70  PLAYDLIKYLGAAYLLWMA---WNAIKP----GGASPFQTRDLPHDSNATLFR---MGFL 119
             A+++IK  GA YL+++    W A  P    G A           +  T ++    GFL
Sbjct: 69  ETAFNVIKVAGALYLIYLGFSQWRARVPSEEQGEALDAANASARAHARQTWWQRCMTGFL 128

Query: 120 TNLLNPKAAMFYMSFLPQFIHAEHGHVMLQSLTLGVTQIAVSFTVNGLLILTASAIAGFF 179
           TN  NPK  +F ++ LPQFI  +   + LQ L L VT +AV   V       AS +  FF
Sbjct: 129 TNATNPKGIVFMVAVLPQFIDHDR-PLWLQLLVLAVTMVAVDLVVMHGYAFAASRLQRFF 187

Query: 180 SSNPGWMRAQRYLMG 194
            S    +RAQ    G
Sbjct: 188 RSQKA-IRAQNRFFG 201


>gi|300314064|ref|YP_003778156.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score = 65.9 bits (159), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 82/174 (47%), Gaps = 13/174 (7%)

Query: 4   LNDLLIFALAALVLVLTPGPNMMYCVSRSICQGRAAGMISLLGVAAGFVVHMLAATFGLT 63
           + D+     A +V +L PGP     ++ +   G   G  +  G+  G VV M  A  G+ 
Sbjct: 10  ITDIWQLIAATMVFLLLPGPGTFCVLTCAAKGGVRGGFAAQAGLMLGDVVLMFLAAAGVA 69

Query: 64  ALFLAVPLAYDLIKYLGAAYLLWMAWN---AIKPGGAS--PFQTRDLPHDSNATLFRMGF 118
           AL  A PL +  ++YLGAAYL ++      A   GG +  PF        SNA  FR GF
Sbjct: 70  ALLHANPLLFHGLQYLGAAYLAYLGARLLFARGEGGGTVVPF--------SNAAEFRRGF 121

Query: 119 LTNLLNPKAAMFYMSFLPQFIHAEHGHVMLQSLTLGVTQIAVSFTVNGLLILTA 172
           L  L NPKA +FYM+F P F+        L  +T+G      +F    +L++  
Sbjct: 122 LVTLFNPKAIVFYMAFFPLFLDPATQQGALTFITMGAVISCCTFLYGSVLVMVG 175


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 595,656
Number of extensions: 21032
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 5
Length of query: 210
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,236,335
Effective search space: 159487215
Effective search space used: 159487215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)