BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0075.p
         (332 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311628|ref|YP_003775720.1| metallo-beta-lactamase [Herbasp...   116   2e-27
gi|300309610|ref|YP_003773702.1| cation/multidrug efflux protein...   101   9e-23
gi|300312714|ref|YP_003776806.1| hydroxyacylglutathione hydrolas...    68   9e-13

>gi|300311628|ref|YP_003775720.1| metallo-beta-lactamase
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score =  116 bits (291), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/264 (34%), Positives = 126/264 (47%), Gaps = 44/264 (16%)

Query: 7   FDPASCTYTYLLGDR--DEALLIDPVFEQAPRD-----------LALLDELGLKLLATLD 53
           FD  + T +YL+ DR   +  LID V +  P+            +A + ELG ++   L+
Sbjct: 11  FDTTTSTVSYLVLDRASGQCALIDTVLDYDPKSGRTATTSADQLIARVRELGAQVQWILE 70

Query: 54  THVHADHVTGAWWLHERCGSRIALAS-------------VAGAMFS------DLPLGHGD 94
           TH HADH++ A +L ++ G RIA+                AGA F+      D     G 
Sbjct: 71  THAHADHLSAAPYLKQQLGGRIAIGEHITQVQAVFGKLFNAGAAFAHDGSQFDQLFADGA 130

Query: 95  RIRFGRRYLEVRATPGHTNGCLTYVLD--GQHMAFTGDSLLI--RGCGRTDFQQGSPLQL 150
           R + G+    V  TPGHT  CLTYV++  G   AF GD+L +   G  R DF  G    L
Sbjct: 131 RFQIGQLQARVMHTPGHTPACLTYVVEEAGHIAAFVGDTLFMPDYGTARCDFPGGDARTL 190

Query: 151 FRSVHEQILTLPDECLLYPAHDYRGI-----TVTSVGEERRFNPRLGGEADAHDFVGYMD 205
           FRS+ + +L+LPD   LY  HDYR        VT+V EERR N  +        FV    
Sbjct: 191 FRSI-QAVLSLPDHAQLYMCHDYRPNGRELRYVTTVAEERRHNIHVHEGVSEESFVTMRK 249

Query: 206 --NLNLPHPKLMAQAVPANLRSGK 227
             +  L  P L+  +V  N+R+G+
Sbjct: 250 ARDATLDMPVLLLPSVQVNMRAGQ 273


>gi|300309610|ref|YP_003773702.1| cation/multidrug efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1047

 Score =  101 bits (251), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 90/148 (60%), Gaps = 12/148 (8%)

Query: 184 ERRFNPRLGGEADAHDFVGYMDNLNLPHPKLMAQAVPANLRSGKPEDARLPAGYAIELAG 243
           ER   P +   AD    V  +D  N  + KL A      LR      A LP GY I++ G
Sbjct: 819 ERNRQPTITVLADVRPGVQGIDVTNDVNQKLNA------LR------AELPVGYRIDVGG 866

Query: 244 AAADSSKAQDSIAANVPLVIFIIFTLLMLQLHSFSRAMLVFLTGPLGVAGAAVALLVLHR 303
              +++KAQ SI+A +PL++  +  LLM+QL SF R M+V +T PLG+ G   ALL+  +
Sbjct: 867 PVEENAKAQSSISAQMPLMVIAVLLLLMVQLQSFGRTMMVVMTAPLGLIGVVGALLLFGQ 926

Query: 304 PFGFVAQLGVIALFGMIIRNSVILIDQI 331
           PFGFVA LG IA+ G+I+RNSVIL+DQI
Sbjct: 927 PFGFVAMLGTIAMLGIIMRNSVILVDQI 954


>gi|300312714|ref|YP_003776806.1| hydroxyacylglutathione hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 264

 Score = 68.2 bits (165), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 82/172 (47%), Gaps = 17/172 (9%)

Query: 13  TYTYLLGDRDEALLIDPVFEQAPRDLALLDELGLKLLATLDTHVHADHVTGAWWLHERCG 72
            Y +++ D   A ++DP    A   LA L   GL L A L TH HADHV G   L  +  
Sbjct: 12  NYLWIIHDGRYAAVVDP--GDAVPVLAALQAEGLTLAAILLTHHHADHVGGVVELARQAA 69

Query: 73  S-RIALASVAGAMFSD-------LPLGHGDRIR---FGRRYLEVRATPGHTNGCLTYVLD 121
           S    +  V G            +PL   D++     G R LEV   PGHT G + Y   
Sbjct: 70  SDTFPIIPVYGPAREQSRIKGMTVPLHGNDQVDIAVLGLR-LEVIEVPGHTMGHIAYHAP 128

Query: 122 GQHMAFTGDSLLIRGCGRTDFQQGSPLQLFRSVHEQILTLPDECLLYPAHDY 173
            Q M F GD+L   GCGR    +G+P Q+  S+  ++ +LP +  +Y AH+Y
Sbjct: 129 EQAMLFCGDTLFAGGCGR--LFEGTPQQMVDSL-SRLASLPGQTAVYCAHEY 177


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.142    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 949,089
Number of extensions: 36716
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 3
Length of query: 332
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,212,660
Effective search space: 298314360
Effective search space used: 298314360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)