BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0074.p
         (176 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309610|ref|YP_003773702.1| cation/multidrug efflux protein...    91   8e-20

>gi|300309610|ref|YP_003773702.1| cation/multidrug efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1047

 Score = 90.5 bits (223), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 86/150 (57%), Gaps = 2/150 (1%)

Query: 2   MNRNPNVIGLNDNWNESV-KSLRIDLDQDKLRVLGIGSQTVMRTVNTLLTGTAVGQYREN 60
           M +      +  +W+E   +S+  ++DQ +   LG+ SQ +   +   L+G  + QYRE 
Sbjct: 708 MRKESRATNIQFDWDEPAQRSVSFEIDQKRAAQLGLTSQQISNFLAMQLSGYTITQYRER 767

Query: 61  DKLIDILVRQPLEERATIDALNQANIPTASGKSVPLAQVARVSLAWEPGVVWREDREWAI 120
           DKLI + +R P  ER     L   ++PTA+G  VPLA + + +   E GV+W  +R+  I
Sbjct: 768 DKLISVDLRAPRSERVDPARLATLSMPTANGP-VPLATLGQFNNTLEYGVIWERNRQPTI 826

Query: 121 TVQSDVADGIQGPTVSSQISPQLDAIRARL 150
           TV +DV  G+QG  V++ ++ +L+A+RA L
Sbjct: 827 TVLADVRPGVQGIDVTNDVNQKLNALRAEL 856


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 548,144
Number of extensions: 20768
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,245,805
Effective search space: 120843085
Effective search space used: 120843085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)