BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0072.p
         (347 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311437|ref|YP_003775529.1| signal transduction containing ...   350   1e-97
gi|300311452|ref|YP_003775544.1| signal transduction containing ...    91   2e-19

>gi|300311437|ref|YP_003775529.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  350 bits (897), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 174/315 (55%), Positives = 235/315 (74%), Gaps = 1/315 (0%)

Query: 1   VIGSLVAFINVDAAILLSDAIFVLPKEHVILEILETVELTLPLMQRIEALSEAGYMFAID 60
           VIG+L  FINVDAA+L+SD I+ LP + V+LEILETV +T  L+ R+  L +AGY+FA+D
Sbjct: 71  VIGNLQGFINVDAAVLMSDFIYFLPNDKVVLEILETVRVTPELVVRVRELVKAGYVFALD 130

Query: 61  DLVQESDRTDLLMRVAGIVKVDVLNIPDDELAALSRSLRQKGKKLLAEKVETVEKFRLCS 120
           D+V ES   + L+ +  I+K+DV+ +   +L  LS   ++  K+LLAEKVET+++F  C 
Sbjct: 131 DVVAESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHFKRAQKELLAEKVETLQQFNDCV 190

Query: 121 ECGFDYYQGYYFARPDVLRGKKLNASSILIMQILALVIKGANNYEIVRFIKKDIALSLML 180
             GFDY+QGYYFA+P +L+GKKL AS ++IM +L L+++  +N EIVRFIK+D+ALSL L
Sbjct: 191 TFGFDYFQGYYFAKPMILQGKKLEASKMVIMHLLTLLVRNVDNGEIVRFIKRDVALSLTL 250

Query: 181 LRLVNTPMYGFRRHIASLGQALLVLGDRQLKRWLQILLYANPDNGR-NASSPLMILAATR 239
           LRLVNTP+YGF++ I SLGQAL+VLG RQLKRWLQILL+AN D  + +  SPLMILAATR
Sbjct: 251 LRLVNTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILLFANTDKEQAHTMSPLMILAATR 310

Query: 240 GKLCELLAQKAQPRRSSRSDTAFMVGVLSLTDALLNQDIADILAQIGVSIEVREALLSRS 299
           GK+ EL+  + +P R   S+ AF VG++SL DAL    +  +L QI VS E+REALL R+
Sbjct: 311 GKMLELITTRIRPGRRKMSEMAFTVGIMSLVDALFGMSMETVLRQITVSTEIREALLRRT 370

Query: 300 GFYGGLLQLAEASEK 314
           GFYG  L+L E +E+
Sbjct: 371 GFYGVALRLVECTEQ 385


>gi|300311452|ref|YP_003775544.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 399

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 118/208 (56%), Gaps = 2/208 (0%)

Query: 106 LAEKVETVEKFRLCSECGFDYYQGYYFARPDVLRGKKLNASSILIMQILALVIKGANNYE 165
           LAE V    +F  C   GF ++ G Y   PD    +K + S   ++++L LV + A+  E
Sbjct: 155 LAENVADAVQFDACRVQGFRWFSGDYALHPDSRLSQKNSISRARLLKLLELVARDADANE 214

Query: 166 IVRFIKKDIALSLMLLRLVNTPMYGFRRHIASLGQALLVLGDRQLKRWLQILLYANPDNG 225
           +   +K+D ALS  L +LV++  +GF  HI +  QA+ +LG RQL+RWLQ+LLYA    G
Sbjct: 215 LESLLKQDPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWLQLLLYAR-FPG 273

Query: 226 RNASSPLMILAATRGKLCELLAQKAQPRRSSRSDTAFMVGVLSLTDALLNQDIADILAQI 285
             +++PL+  AA R  + E +AQ     +    D AF+ G+ SL D LL   + DI+  +
Sbjct: 274 DESANPLLPRAAARAAMMEAMAQCIDCTQEEL-DRAFITGMFSLLDILLGMPLNDIIEPL 332

Query: 286 GVSIEVREALLSRSGFYGGLLQLAEASE 313
            + +++  AL+ RSG  G LL + E SE
Sbjct: 333 KLPVDIVNALVRRSGRLGKLLDVVERSE 360


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 809,943
Number of extensions: 29343
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,212,660
Effective search space: 316504260
Effective search space used: 316504260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)