BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0065.p
         (195 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311895|ref|YP_003775987.1| ATP-dependent Clp protease prot...   376   e-106

>gi|300311895|ref|YP_003775987.1| ATP-dependent Clp protease
           proteolytic subunit [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score =  376 bits (965), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/194 (94%), Positives = 188/194 (96%)

Query: 1   MLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDATANLVVAQLLFLESENPDKD 60
           MLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDA ANL+VAQLLFLESENPDKD
Sbjct: 14  MLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESENPDKD 73

Query: 61  ISLYINSPGGSVSAGMAIFDTMQFIKPDVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSR 120
           ISLYINSPGGSVSAGMAIFDTMQFIKP VSTLCTGLAASMGAFLLAAGAKGKRFSLPNSR
Sbjct: 74  ISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSR 133

Query: 121 IMIHQPLGGAQGQASDIEIQAREILYLRERLNAILAEKTGRTIDQIGKDTDRDNFMSAQA 180
           IMIHQPLGGAQGQASDIEIQAREILYLRERLN ILAEKTGRT++QI KDTDRDNFMSA A
Sbjct: 134 IMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDRDNFMSADA 193

Query: 181 AAEYGLIDQVLEKR 194
           AAEYGLID+VL +R
Sbjct: 194 AAEYGLIDKVLTER 207


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 536,716
Number of extensions: 18728
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 115
Effective length of database: 1,241,070
Effective search space: 142723050
Effective search space used: 142723050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)