BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0063.p
         (776 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311893|ref|YP_003775985.1| ATP-dependent protease LA prote...  1466   0.0  

>gi|300311893|ref|YP_003775985.1| ATP-dependent protease LA protein
           [Herbaspirillum seropedicae SmR1]
          Length = 802

 Score = 1466 bits (3796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 743/778 (95%), Positives = 763/778 (98%), Gaps = 3/778 (0%)

Query: 1   MVIPLFVGRPKSIKALEAAMEQGKSIMLAAQKAAAKDEPSADDIYEIGCVANILQMLKLP 60
           MVIPLFVGRPKSIKALEAAMEQGKSIMLAAQKAAAKDEPSA+DIYEIGCVANILQMLKLP
Sbjct: 26  MVIPLFVGRPKSIKALEAAMEQGKSIMLAAQKAAAKDEPSAEDIYEIGCVANILQMLKLP 85

Query: 61  DGTVKVLVEGAQRARIHHISELDTHFVADLTPVESELGDEAEVEAMRRTIVQQFDQYVKL 120
           DGTVKVLVEGAQRARIHHISELDTHFVADLTPVESE GD+AEVEAMRRTIVQQFDQYVKL
Sbjct: 86  DGTVKVLVEGAQRARIHHISELDTHFVADLTPVESEQGDDAEVEAMRRTIVQQFDQYVKL 145

Query: 121 NKKIPPEILSSLAGIDDAGRLADTIAAHLPLKLEQKQVILEIFNVAKRHEHLLGQLEGEL 180
           NKKIPPEIL+SLAGIDDAGRLADTIAAHLPLKLEQKQVILEIFNVAKR+EHLLGQLEGEL
Sbjct: 146 NKKIPPEILTSLAGIDDAGRLADTIAAHLPLKLEQKQVILEIFNVAKRYEHLLGQLEGEL 205

Query: 181 DILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQKELGEGEDGADLEELEKKILSAKMPK 240
           DILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQKELGEGEDGADLEELEKKI +AKMPK
Sbjct: 206 DILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQKELGEGEDGADLEELEKKIAAAKMPK 265

Query: 241 EALEKAQSELRKLKLMSPMSAEATVVRNYIDTLVGLPWKKKSKVNNDLPNAEKVLEGDHY 300
           EALEKAQSEL+KLKLMSPMSAEATVVRNYIDTLV LPWKKKSKVNNDL NAEKVLEGDHY
Sbjct: 266 EALEKAQSELKKLKLMSPMSAEATVVRNYIDTLVALPWKKKSKVNNDLTNAEKVLEGDHY 325

Query: 301 GLDKVKERILEYLAVQQRVDKLKAPILCFVGPPGVGKTSLGQSIARATNRKFVRMALGGV 360
           GL+KVKERILEYLAVQQRVDKLKAPILCFVGPPGVGKTSLGQSIARATNRKFVRMALGGV
Sbjct: 326 GLEKVKERILEYLAVQQRVDKLKAPILCFVGPPGVGKTSLGQSIARATNRKFVRMALGGV 385

Query: 361 RDEAEIRGHRRTYIGSMPGKILQSLSKVGVRNPLFLLDEIDKLGMDFRGDPSSALLEVLD 420
           RDEAEIRGHRRTYIGSMPGKILQSLSKVGVRNPLFLLDEIDKLGMDFRGDPSSALLEVLD
Sbjct: 386 RDEAEIRGHRRTYIGSMPGKILQSLSKVGVRNPLFLLDEIDKLGMDFRGDPSSALLEVLD 445

Query: 421 PEQNHTFSDHYIEVDFDLSDVMFVATSNSFNIPPALLDRMEVIRLSGYTEDEKTSIAQRY 480
           PEQNHTFSDHYIEVDFDLSDVMFVATSNSFNIPPALLDRMEVIRLSGYTEDEKTSIAQRY
Sbjct: 446 PEQNHTFSDHYIEVDFDLSDVMFVATSNSFNIPPALLDRMEVIRLSGYTEDEKTSIAQRY 505

Query: 481 LLPKQIKNNGLKEGEISVAESALRDIIRYYTREAGVRSLEREVSKICRKVVKMLLLKKQE 540
           LLPKQIKNNGLKEGEISVAESA+RDIIRYYTREAGVRSLEREVSKICRKVVK+LLLKKQE
Sbjct: 506 LLPKQIKNNGLKEGEISVAESAIRDIIRYYTREAGVRSLEREVSKICRKVVKLLLLKKQE 565

Query: 541 KKVTVTSRNLDKFLGVRRFDFGIAEKENQVGQVVGLAWTEVGGDLLTIEAVTMPGKGGVI 600
           KKVTVTSRNLDKFLGVRRFDFGIAEKENQ+GQVVGLAWTEVGGDLLTIEAV MPGKG +I
Sbjct: 566 KKVTVTSRNLDKFLGVRRFDFGIAEKENQIGQVVGLAWTEVGGDLLTIEAVNMPGKGQII 625

Query: 601 RTGTLGDVMKESIEAARTVVRSRASKLGIKSEVFEKRDIHIHVPEGATPKDGPSAGIAMT 660
           RTGTLGDVMKESIEAARTVVRSRA KLGIK+EVFEK DIHIHVPEGATPKDGPSAGIAMT
Sbjct: 626 RTGTLGDVMKESIEAARTVVRSRARKLGIKNEVFEKSDIHIHVPEGATPKDGPSAGIAMT 685

Query: 661 TAMVSVFTGIPVRADVAMTGEITLRGEVLPIGGLKEKLLAAHRGGIKTVLIPEQNVKDLT 720
           TA+VS+F+GIPVRADVAMTGEITLRGEVLPIGGLKEKLLAAHRGGIKTVLIPEQNVKDL 
Sbjct: 686 TALVSIFSGIPVRADVAMTGEITLRGEVLPIGGLKEKLLAAHRGGIKTVLIPEQNVKDLA 745

Query: 721 EIPDNVKNKLEIVPVRWIDKVLEIALESQPVPLTEEEAAV-VAVAPKE-STDPSVVKH 776
           EIPDNVKNKLEI+PVRWIDKVLE+ALE QPVPL+E+EA V  AVAPKE +TDP VVKH
Sbjct: 746 EIPDNVKNKLEIIPVRWIDKVLEVALERQPVPLSEDEAIVEAAVAPKEGATDP-VVKH 802


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.135    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,103,278
Number of extensions: 84262
Number of successful extensions: 356
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 1
Length of query: 776
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 683
Effective length of database: 1,179,515
Effective search space: 805608745
Effective search space used: 805608745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)