BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0061.p (808 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido... 1061 0.0 gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido... 696 0.0 >gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1180 Score = 1061 bits (2744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/561 (90%), Positives = 534/561 (95%), Gaps = 8/561 (1%) Query: 27 TTVANSTTSVSGTTPLATVSLDDKYTATSGSIFLSGIQALVRLPLLQYLRDQKAGLNTAG 86 T +A+ST V PLA VSLDDKYTAT+G+I+LSGIQALVRLPLLQ +RD+ AGLNTAG Sbjct: 3 TVLASSTDDV----PLAPVSLDDKYTATTGAIYLSGIQALVRLPLLQQIRDRAAGLNTAG 58 Query: 87 FISGYRGSPLGGLDEALWKAQPHLAAHKIKFQPGTNEDMAATAVWGTQQVDXDLIGPAKV 146 FISGYRGSPLGGLDEALW AQPHLAAH++KFQPG NEDMAATAVWGTQQV LIGP+ Sbjct: 59 FISGYRGSPLGGLDEALWHAQPHLAAHRVKFQPGVNEDMAATAVWGTQQVK--LIGPSDY 116 Query: 147 EGVFSMWYGKGPGVDRCGDVLKHMNHAGTSAKGGVLLVAGDDHGAYSSTLPHQSDHIFSA 206 +GV++MWYGKGPGVDRCGDVLKHMNHAGTSA GGVLLVAGDDHGAYSSTLPHQSDHIFSA Sbjct: 117 DGVYAMWYGKGPGVDRCGDVLKHMNHAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSA 176 Query: 207 SMIPMLYPCNVQEYLDLGLHGWAMSRFSGCTVGFKALADTVESSASVDADPYRVEIKYPA 266 SMIPMLYPCNVQEYLDLGLHGWAMSR+SGC VGFKALADTVESSASVDADP+RV+I+ P+ Sbjct: 177 SMIPMLYPCNVQEYLDLGLHGWAMSRYSGCVVGFKALADTVESSASVDADPFRVQIRLPS 236 Query: 267 DFVMPEGGLNARLSTDTLGVQARKQEALMQDYKIYAALAYARANKLNRVMIDSPKARLGI 326 DFVMPEGGLNARLSTDTLGVQARKQEALMQDYKIYAALAYARAN+LNRVMIDSPKARLGI Sbjct: 237 DFVMPEGGLNARLSTDTLGVQARKQEALMQDYKIYAALAYARANRLNRVMIDSPKARLGI 296 Query: 327 IASGKSYLDVLEALSELGIDEDFAAEIGLRLFKVSMPWPLEPEGVREFAQGLDEILVVEE 386 IASGKSYLDVLEALSELGIDE FAAEIGLRLFKVSMPWPLEP+GVREFAQGLDEILVVEE Sbjct: 297 IASGKSYLDVLEALSELGIDEAFAAEIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEE 356 Query: 387 KRQMVEYQLKEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADFSVAQIARVIAA 446 KRQMVEYQLKEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADFSVAQIARVIAA Sbjct: 357 KRQMVEYQLKEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADFSVAQIARVIAA 416 Query: 447 RIARFHTSDLIKARLAFLDAKDAVLNKAISTPPRPAYYCSGCPHNTSTKVPEGSFALAGI 506 RIARFHTSDLIKARLAFLDAKDAVL+KA++TPPRPAYYCSGCPHN+ST+VPEGSFALAGI Sbjct: 417 RIARFHTSDLIKARLAFLDAKDAVLSKAVNTPPRPAYYCSGCPHNSSTRVPEGSFALAGI 476 Query: 507 GCHVMATAIYPEFNKLTTHMGGEGGPWIGQAPFSQVPHVFANLGDGTYFHSGYLAIRAAV 566 GCHVMATAIYPEFNKLTTHMGGEG PWIGQAPFS+VPHVFANLGDGTYFHSGYLAIRAAV Sbjct: 477 GCHVMATAIYPEFNKLTTHMGGEGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAV 536 Query: 567 AANVNMTYKILYNXAANVNMT 587 AA VNMTYKILYN A V MT Sbjct: 537 AAKVNMTYKILYNDA--VAMT 555 >gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1199 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/551 (63%), Positives = 416/551 (75%), Gaps = 25/551 (4%) Query: 50 KYTATSGSIFLSGIQALVRLPLLQYLRDQKAGLNTAGFISGYRGSPLGGLDEALWKAQPH 109 KYT G +F++GIQALVRLP+LQ DQ+AGLNTAGFI+GYRGSPLG +D+ KA+ + Sbjct: 21 KYTLERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFITGYRGSPLGAVDQTAEKARKY 80 Query: 110 LAAHKIKFQPGTNEDMAATAVWGTQQVDXDLIGPAKVEGVFSMWYGKGPGVDRCGDVLKH 169 L A +IKF PG NED+AAT+VWGTQQV+ L A+ +GVFS+WYGKGPGVDRCGDV KH Sbjct: 81 LEAKQIKFHPGMNEDLAATSVWGTQQVN--LFKGAQYDGVFSLWYGKGPGVDRCGDVFKH 138 Query: 170 MNHAGTSAKGGVLLVAGDDHGAYSSTLPHQSDHIFSASMIPMLYPCNVQEYLDLGLHGWA 229 N AGTS GGVL++AGDDH A SST HQS+HI A IP+LYP +VQEYLD GLHGWA Sbjct: 139 ANMAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYLDYGLHGWA 198 Query: 230 MSRFSGCTVGFKALADTVESSASVDADPYRVEIKYPADFVMPEGGLNARLSTDTLGVQAR 289 MSR++G V K + D VES SV DP RV+I+ PADF +P GLN R LG Sbjct: 199 MSRYTGLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELPPDGLNIRQPDTVLG---- 254 Query: 290 KQEALMQDYKIYAALAYARANKLNRVMIDSPKARLGIIASGKSYLDVLEALSELGIDEDF 349 QEA M +YK YAALAYARANKLNR++ DSP+AR+GII +GKSYLD +AL +LGIDE Sbjct: 255 -QEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDTRQALEDLGIDEQA 313 Query: 350 AAEIGLRLFKVSMPWPLEPEGVREFAQGLDEILVVEEKRQMVEYQLKEQLYNWRDDVRPR 409 A +IG+RL+KV M WPLE EGVREFAQGLDEILVVEEKRQ++EYQLKE+LYNWRDDVRPR Sbjct: 314 ARDIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLKEELYNWRDDVRPR 373 Query: 410 VIGKFDEKGEWVAPR----GEWLLTSKADFSVAQIARVIAARIARFH----TSDLIKARL 461 V+GKFD+ GEW + G WLL + + + AQIAR IA RI+R+ ++AR+ Sbjct: 374 VVGKFDDTGEWSGSQREGHGNWLLPATYELNPAQIARAIATRISRYFAGHPVEQQVRARV 433 Query: 462 AFLDAKDAVLNKAISTPPRP-----AYYCSGCPHNTSTKVPEGSFALAGIGCHVMATAIY 516 A+L+AK+A LN IS+ P P ++CSGCPHNTSTK+PEGS LAGIGCH M T + Sbjct: 434 AYLEAKEATLN--ISSKPDPDKDRIPHFCSGCPHNTSTKLPEGSRGLAGIGCHYMVTWMD 491 Query: 517 PEFNKLTTHMGGEGGPWIGQAPFSQVPHVFANLGDGTYFHSGYLAIRAAVAANVNMTYKI 576 E KL THMGGEG W+GQAPF+ HVFANLGDGTYFHSG LA+RA+VAA VN+TYKI Sbjct: 492 RE-TKLFTHMGGEGVTWVGQAPFTDEKHVFANLGDGTYFHSGLLAVRASVAAKVNITYKI 550 Query: 577 LYNXAANVNMT 587 LYN A V MT Sbjct: 551 LYNDA--VAMT 559 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,459,653 Number of extensions: 103767 Number of successful extensions: 318 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 313 Number of HSP's successfully gapped: 2 Length of query: 808 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 715 Effective length of database: 1,179,515 Effective search space: 843353225 Effective search space used: 843353225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)