BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0060.p
         (446 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313189|ref|YP_003777281.1| ubiquinone biosynthesis transme...   808   0.0  

>gi|300313189|ref|YP_003777281.1| ubiquinone biosynthesis
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 524

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/446 (89%), Positives = 425/446 (95%)

Query: 1   LLPLDIADELTRLQDRVPPFDSDLAIAQIEKSLGAHPDVLFASFDRTPIASASIAQVHFA 60
           L+P DIA+ELT LQDRVPPFDS+LA+ QIEKSLGAHPD+LFA+F+RTP+ASASIAQVHFA
Sbjct: 78  LMPPDIANELTLLQDRVPPFDSELAVKQIEKSLGAHPDLLFATFERTPVASASIAQVHFA 137

Query: 61  TLKDGTEVAVKVLRPGMRSTIDHDIGLMHIAADWVERLWADGRRLKAKEVVGEFDKYLHD 120
           TLKDG EVAVKVLRPGMR  IDHDIGLMH+AADW+ERLWADGRRLKAKEVVGEFDKYLHD
Sbjct: 138 TLKDGKEVAVKVLRPGMRDIIDHDIGLMHVAADWLERLWADGRRLKAKEVVGEFDKYLHD 197

Query: 121 ELDLMREAANASQLRRNFANSDLLMVPEMYWDYCSSSVIVMERMHGIPIGQTERLQAEGV 180
           ELDLMREAANASQLRRNFA S LLMVPEMYWDYCS SVIVMERMHGIPI QTERL+AEGV
Sbjct: 198 ELDLMREAANASQLRRNFAESTLLMVPEMYWDYCSPSVIVMERMHGIPISQTERLRAEGV 257

Query: 181 DLSKLSRDGVEIFFTQVFRDGFFHADMHPGNILVSTAPATFGRYIALDFGIVGTLTDFDK 240
           DLSKLSRDGVEIFFTQVFRDGFFHADMHPGNILVS AP +FGRYIALDFGIVGTL DFDK
Sbjct: 258 DLSKLSRDGVEIFFTQVFRDGFFHADMHPGNILVSVAPESFGRYIALDFGIVGTLNDFDK 317

Query: 241 DYLSQNFLAFFQRDYKRVAEAHIESGWAPKDTRVDELEAAVRACCEPIFDRPLKDISFGQ 300
           DYLSQNFLAFF+RDYKRVAEAHIESGWAPKDTRVDELEAAVRACCEPIFDRPLKDISFGQ
Sbjct: 318 DYLSQNFLAFFRRDYKRVAEAHIESGWAPKDTRVDELEAAVRACCEPIFDRPLKDISFGQ 377

Query: 301 VLLRLFQTSRRFNVEVQPQLVLLQKTLLNVEGLGRQLDPELDLWKTAKPYLERWMNEQIG 360
           VLLRLFQTSRRFNVEVQPQLVLLQKTLLNVEGLGRQLDP+LDLWKTAKPYLERWM+EQIG
Sbjct: 378 VLLRLFQTSRRFNVEVQPQLVLLQKTLLNVEGLGRQLDPDLDLWKTAKPYLERWMSEQIG 437

Query: 361 WRGFIQQLKVEVPRYSRLLPQLPRLAHQALTMATEGGRHEQNADLLRKLVAEQRRTNLLL 420
           WRGF++QLKVEVPRYSRLLP+LPRLAHQALT  TEG    QN +L+RKL+AEQRRTN+ L
Sbjct: 438 WRGFVEQLKVEVPRYSRLLPELPRLAHQALTRYTEGDSQPQNTELIRKLLAEQRRTNMFL 497

Query: 421 GVIVYFGGGLIGGIIVVQVLLHFLRY 446
           GVIVYFGGGLIGG+IV+Q+L+HFL++
Sbjct: 498 GVIVYFGGGLIGGVIVIQLLMHFLKF 523


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,329,255
Number of extensions: 55286
Number of successful extensions: 206
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 358
Effective length of database: 1,203,190
Effective search space: 430742020
Effective search space used: 430742020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 132 (55.5 bits)