BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0057.p
         (238 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313191|ref|YP_003777283.1| transmembrane protein [Herbaspi...   263   1e-71
gi|300309983|ref|YP_003774075.1| transmembrane protein [Herbaspi...   243   1e-65

>gi|300313191|ref|YP_003777283.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  263 bits (671), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 138/230 (60%), Positives = 164/230 (71%), Gaps = 10/230 (4%)

Query: 10  LSHFGMGGAMASMLSTILMVALLAFVAMFLFRMFTRKSGGNTGSAGNNGF-TPQPAYASA 68
           +SHFG+GGAM  +L ++L +ALL    +FL RMF R   G      N  + TP P  +  
Sbjct: 97  MSHFGIGGAMGGLLGSLLTIALLCAAVIFLIRMFAR---GREAQNNNPAYATPMPGVSPI 153

Query: 69  PEPAVYTPEIGSRIEPVGVQAPASLQGNNEFGSSAAAAANAPIIPWGIPADFDVAGFVRS 128
              A  TPEIGS +    +  P +LQGN  +G++A  A       WGIP  FD AGFVR+
Sbjct: 154 GSAAGATPEIGSGLR--DINPPPALQGN-AYGAAAQPAQIQQ---WGIPEGFDTAGFVRN 207

Query: 129 GKTYFIRLQAAWDRGDINDIREFTTPEMFGELRLQLQERGSVANNTDVVQIDGELLGIET 188
            KTYFIRLQAAWDR D+NDIREFTTPEMF ELR+QL ERG+  N TDVVQ+D +LLGIET
Sbjct: 208 AKTYFIRLQAAWDRADVNDIREFTTPEMFAELRMQLTERGAAPNATDVVQLDAQLLGIET 267

Query: 189 LEHDYLATIKFTGLIKEAPDASAEPFAEIWNLSKPVNGAGGWVLAGIQQV 238
           +  DYLAT++F GLIKEAPD SAEPFAEIWNLSKP+NG+GGWVLAGIQQV
Sbjct: 268 MAFDYLATVRFQGLIKEAPDVSAEPFAEIWNLSKPLNGSGGWVLAGIQQV 317


>gi|300309983|ref|YP_003774075.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  243 bits (620), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 132/228 (57%), Positives = 157/228 (68%), Gaps = 10/228 (4%)

Query: 11  SHFGMGGAMASMLSTILMVALLAFVAMFLFRMFTRKSGGNTGSAGNNGFTPQPAYASAPE 70
           SHFG+GGA+ASM+STIL VAL+A   MF+ RMF RKS      A         A   A +
Sbjct: 20  SHFGLGGALASMISTILTVALIALAIMFVVRMFRRKS-----EASQPAPAWAGAAPQAAD 74

Query: 71  PAVYTPEIGSRIEPVGVQAPASLQGNNEFGSSAAAAANAPIIPWGIPADFDVAGFVRSGK 130
            A  TP+IGS ++     A A+ QG    G   A  A A    +G+PA FD  GFVR+ K
Sbjct: 75  NASATPQIGSMLK-TDQSAAAATQGGFGGGFGNAEQAPA----YGVPAGFDTVGFVRNAK 129

Query: 131 TYFIRLQAAWDRGDINDIREFTTPEMFGELRLQLQERGSVANNTDVVQIDGELLGIETLE 190
           TYFIRLQAAWD+ DINDIREFTTPEMF ELRLQ+QERG+ +N TDVV +D E+LG+ET+ 
Sbjct: 130 TYFIRLQAAWDKADINDIREFTTPEMFAELRLQIQERGAASNQTDVVSLDAEVLGVETVG 189

Query: 191 HDYLATIKFTGLIKEAPDASAEPFAEIWNLSKPVNGAGGWVLAGIQQV 238
           +DYLA++KF G IKE P AS   FAEIWNLSKP  G GGWVLAGIQQ+
Sbjct: 190 NDYLASVKFFGFIKEDPTASPAQFAEIWNLSKPAAGQGGWVLAGIQQI 237


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 688,781
Number of extensions: 25554
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 156
Effective length of database: 1,231,600
Effective search space: 192129600
Effective search space used: 192129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)