BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0056.p
         (244 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313192|ref|YP_003777284.1| ubiquinone/menaquinone biosynth...   472   e-134

>gi|300313192|ref|YP_003777284.1| ubiquinone/menaquinone
           biosynthesis;
           2-octaprenyl-6-methoxy-1,4-benzoquinonemethyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  472 bits (1215), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 223/244 (91%), Positives = 237/244 (97%)

Query: 1   MTNTTHFGYQTVSEDDKVHKVAEVFHSVAAKYDVMNDFMSAGLHRIWKAFTIAQAGVRPG 60
           MTNTTHFGY+TV E++KV KVAEVFHSVAAKYDVMNDFMSAGLHR+WKAFTIAQAG+RPG
Sbjct: 1   MTNTTHFGYETVKEEEKVRKVAEVFHSVAAKYDVMNDFMSAGLHRLWKAFTIAQAGIRPG 60

Query: 61  FKVLDIAGGTGDLSKAFAKQAGPNGEVWLTDINESMLRVGRDRLLNKGIPTPTLLCDAEK 120
           FKVLDIAGGTGDLSKAFAKQAGP+GEVW TDINESMLRVGRDRLLN+GI TPT+LCDAEK
Sbjct: 61  FKVLDIAGGTGDLSKAFAKQAGPSGEVWHTDINESMLRVGRDRLLNQGIVTPTMLCDAEK 120

Query: 121 LPFPDNYFDRVSVAFGLRNMTHKDIALSEMRRVLKPGGKLLVLEFSKVWEPLKKPYDVYS 180
           LPF DNYFDRVSVAFGLRNMTHKD AL+EMRRVLKPGGKLLVLEFSKVWEPLKKPYDVYS
Sbjct: 121 LPFRDNYFDRVSVAFGLRNMTHKDAALAEMRRVLKPGGKLLVLEFSKVWEPLKKPYDVYS 180

Query: 181 FSVLPWLGQKVANDAESYRYLAESIRMHPDQETLKKMMEDVGLERVQYYNLTAGVAALHT 240
           FSVLPWLG+KVANDA+SYRYLAESIRMHPDQETLK+MME VGLERVQY+NLTAGVAALHT
Sbjct: 181 FSVLPWLGKKVANDADSYRYLAESIRMHPDQETLKQMMEQVGLERVQYFNLTAGVAALHT 240

Query: 241 GIKL 244
           GIK+
Sbjct: 241 GIKM 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 804,591
Number of extensions: 33010
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,226,865
Effective search space: 197525265
Effective search space used: 197525265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)