BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0054.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313194|ref|YP_003777286.1| diadenosine tetraphosphate (Ap4...   161   4e-41

>gi|300313194|ref|YP_003777286.1| diadenosine tetraphosphate (Ap4A)
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 150

 Score =  161 bits (407), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 74/105 (70%), Positives = 88/105 (83%)

Query: 2   SMANACDLCDGDGGELLFNNGSLRVVLVDEPAYPGFCRVIWNGHVKEMTDLAPADRSAVM 61
           S+  AC+LC GDGGE+L+ +   RVVLVDE  YPGFCRVI + HVKEMTDLAPA R+ + 
Sbjct: 4   SVVPACELCAGDGGEVLWQHPVFRVVLVDEADYPGFCRVICHEHVKEMTDLAPAQRTLMA 63

Query: 62  SAVWAVETAVREVMQPEKMNVASLGNMTPHVHWHVIPRYLDDAHF 106
           +AVWAVE A+REVMQPEK+N+A+LGNMTPHVHWHVIPR+ DD HF
Sbjct: 64  NAVWAVEAALREVMQPEKVNLATLGNMTPHVHWHVIPRFTDDRHF 108


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 678,344
Number of extensions: 26895
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)