BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0047.p
         (329 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313197|ref|YP_003777289.1| threonine dehydratase [Herbaspi...   556   e-160

>gi|300313197|ref|YP_003777289.1| threonine dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 508

 Score =  556 bits (1434), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 261/304 (85%), Positives = 281/304 (92%)

Query: 26  SPSAAAARSIKAGRRITLPDVGLFSDGTAVKLVGEETFRITRQLVDDIILVDTDAVCTAI 85
           + S A ARS+KAGRR+ LPDVGLFSDGTAVKLVGEETFRI ++LVD++I+VDTDAVCTAI
Sbjct: 205 TDSDAMARSLKAGRRVALPDVGLFSDGTAVKLVGEETFRIAKELVDEVIIVDTDAVCTAI 264

Query: 86  KDIFQDTRSIVEPAGALAVAGAKAYIERAKNSKKPIRNQSLITIACGANMNFDRLRFVAE 145
           KDIFQDTRSIVEPAGALAVAGAKAY+ERAK SKKPI+ +SLITIACGANMNFDRLRFVAE
Sbjct: 265 KDIFQDTRSIVEPAGALAVAGAKAYVERAKASKKPIKGESLITIACGANMNFDRLRFVAE 324

Query: 146 MADVGEAREAVFAVTIPEEHGSFKRFCEVVGPRNVTEFNYRISDAKSAHIFVGIQTSSAD 205
           MAD GEAREAVFAVTIPEE GSF+RFCE VGPRNVTEFNYRISDAK+AH+FVGIQ S+AD
Sbjct: 325 MADAGEAREAVFAVTIPEERGSFRRFCETVGPRNVTEFNYRISDAKAAHVFVGIQVSAAD 384

Query: 206 EPARIAKTFEKNGFGTLDLTHDELAKVHIRHLVGGKSSLAQDELLYRFEFPERPGALMRF 265
           E  +IA+ FEK GFG LDLTHDELAKVHIRHLVGGKS L  DELLYRFEFPERPGALM+F
Sbjct: 385 EAGKIARNFEKAGFGVLDLTHDELAKVHIRHLVGGKSDLTGDELLYRFEFPERPGALMKF 444

Query: 266 LSTMNPNWNISLFHYRNQGGDVGRILVGLQVPKKEMKTFRAFLDNLGYRHWDESKNPLYK 325
           LS+MNP WNISLFHYRNQGGDVGRIL+GLQVPKKEMK FRAFL  LGYRHWDESKNPLYK
Sbjct: 445 LSSMNPGWNISLFHYRNQGGDVGRILIGLQVPKKEMKEFRAFLAQLGYRHWDESKNPLYK 504

Query: 326 LFLG 329
           LFLG
Sbjct: 505 LFLG 508


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 960,965
Number of extensions: 37545
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,212,660
Effective search space: 294676380
Effective search space used: 294676380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)