BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0046.p
         (180 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313198|ref|YP_003777290.1| hypothetical protein Hsero_3909...   181   3e-47

>gi|300313198|ref|YP_003777290.1| hypothetical protein Hsero_3909
           [Herbaspirillum seropedicae SmR1]
          Length = 291

 Score =  181 bits (459), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/124 (69%), Positives = 100/124 (80%), Gaps = 5/124 (4%)

Query: 1   MNHAN-----TNNSPDTSPLGKSSAYPDVYDPALLFPIPRQPKRDELGVTGTLPFFGVDI 55
           M+H N      ++SP++SPLGKSS YP  YDP+LLFPIPR PKR EL ++GTLPFFGVD+
Sbjct: 1   MDHTNPSASPASHSPESSPLGKSSQYPTHYDPSLLFPIPRAPKRAELQISGTLPFFGVDL 60

Query: 56  WNAYEVSWLNQRGKPQIAIATFMIQADSPNIIESKSFKLYLNSFNQTRLEDQQALVALLQ 115
           W AYE+SWLN RGKPQIAIATFM+ ADSPNIIESKSFKLYLNSFNQ RLE    L+  ++
Sbjct: 61  WTAYEISWLNLRGKPQIAIATFMVPADSPNIIESKSFKLYLNSFNQERLESADQLIDKMR 120

Query: 116 KDLS 119
            DLS
Sbjct: 121 TDLS 124


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 502,857
Number of extensions: 18758
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 101
Effective length of database: 1,245,805
Effective search space: 125826305
Effective search space used: 125826305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)