BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0041.p
         (287 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313202|ref|YP_003777294.1| P-loop-containing kinase [Herba...   440   e-125

>gi|300313202|ref|YP_003777294.1| P-loop-containing kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 300

 Score =  440 bits (1131), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/286 (74%), Positives = 243/286 (84%)

Query: 1   MRIVLITGISGSGKSVALHVLEDAGYFCVDNLPPALLRSLVETRLKEGDDTMAVATDARS 60
           MRIVLITGISGSGKSVALHVLEDAGYFCVDNLPP+LL  LV+TR++EG   +AVATDARS
Sbjct: 1   MRIVLITGISGSGKSVALHVLEDAGYFCVDNLPPSLLCDLVQTRIQEGASRLAVATDARS 60

Query: 61  ADSLAGLGPDIQWLKDQGHDVKVFFLTATTESLVTRFSETRRSHPLSHRLLPNQNPSDRM 120
           ADSLA L  DI  L+  GHDVKVFFLTA++E+L+TRFSETRRSHPLSHRLLP  NPSDR+
Sbjct: 61  ADSLATLRHDIDQLRADGHDVKVFFLTASSETLITRFSETRRSHPLSHRLLPGGNPSDRL 120

Query: 121 TLTECIHKEREMLSAVEGLGHVIDTSNLSANKLRAWIRDLIDTSRASLTVLFESFAFKFG 180
           TL+ECI  E+EML+ ++ +G V+DTS LS+NKLR WI+DL+D  R+ LT+L ESFAFK G
Sbjct: 121 TLSECIELEKEMLADMQEIGLVMDTSQLSSNKLRGWIKDLVDLERSPLTLLIESFAFKHG 180

Query: 181 VPLDADLVFDVRMLPNPHYDLRLRPLTGRDAPVIEFLEDLPAVQDLLGDIRNFVEKWLPS 240
           +PLDADLVFDVRMLPNPHYDL LRPLTGRD PVI+FL+    V ++  DIR FVEKWLPS
Sbjct: 181 LPLDADLVFDVRMLPNPHYDLALRPLTGRDQPVIDFLDADAEVAEMFNDIRRFVEKWLPS 240

Query: 241 FKRDNRSYLTVAIGCTGGQHRSVYIVEQLAKHFAAQENVVVRHRQL 286
           FK DNRSYLTVAIGCTGGQHRSVY+ E+LA HF A E VV RHRQL
Sbjct: 241 FKGDNRSYLTVAIGCTGGQHRSVYLAERLASHFRATEQVVCRHRQL 286


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 890,956
Number of extensions: 36378
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,222,130
Effective search space: 248092390
Effective search space used: 248092390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)