BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0040.p
         (371 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313203|ref|YP_003777295.1| A/G-specific adenine glycosylas...   572   e-164
gi|300310949|ref|YP_003775041.1| endonuclease III protein [Herba...    59   6e-10

>gi|300313203|ref|YP_003777295.1| A/G-specific adenine glycosylase
           [Herbaspirillum seropedicae SmR1]
          Length = 378

 Score =  572 bits (1475), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 274/364 (75%), Positives = 312/364 (85%), Gaps = 2/364 (0%)

Query: 7   NTEAAQDFADPTFSAAVIGWQKQHGRHALPWQNTRDAYRIWLSEIMLQQTQVTAVIPYYQ 66
           + EA Q + DP+FSAAVI WQKQHGRH LPWQNTRDAYR+WLSEIMLQQTQV AVIPYYQ
Sbjct: 14  SAEAGQ-YEDPSFSAAVIAWQKQHGRHKLPWQNTRDAYRVWLSEIMLQQTQVAAVIPYYQ 72

Query: 67  KFLQSFPTVESLAAAPSEAVMAHWSGLGYYTRARNLHRCAQRVTAEYGGRFPDDPELLAD 126
           +FL+  P V +LAAAPSE VMA WSGLGYYTRARNLH+CAQRV  +YGGRFPDDP+LLAD
Sbjct: 73  RFLERCPDVFALAAAPSEDVMALWSGLGYYTRARNLHKCAQRVVEQYGGRFPDDPDLLAD 132

Query: 127 LPGIGRSTAAAIAAFSYGKRAAILDGNVKRVFARVFGVEGFPGAKAVEDQLWRRAVALLP 186
           LPGIGRSTAAAIAAFSYG+RAAILDGNVKRVFARVFG++G+PGAK +ED+LW RAVALLP
Sbjct: 133 LPGIGRSTAAAIAAFSYGRRAAILDGNVKRVFARVFGIDGYPGAKPIEDKLWLRAVALLP 192

Query: 187 QADMESYTQGLMDLGATLCVRGKPACDRCPLAPRCVALATGRTAELPVRKPKKAVPEKET 246
             D+ESYTQGLMDLGATLCVRGKPAC+RCPLA RCVALA  R AELPV KPKKAVPE+ET
Sbjct: 193 DQDIESYTQGLMDLGATLCVRGKPACERCPLAGRCVALAQDRVAELPVSKPKKAVPERET 252

Query: 247 MMLVVSEGKDVLLEQRPDSGIWGGLLSLPELPPSSDADAFGVAVEGAMQAFGVIAACRKL 306
           +MLV++ G+DVLLEQRPDSGIWGGLLSLPE+     A  F  AV   +  +G +  CRKL
Sbjct: 253 VMLVITHGEDVLLEQRPDSGIWGGLLSLPEIAVGGAAQ-FDTAVRTLVAPYGELQGCRKL 311

Query: 307 QPFSHVFTHFKLHISPYQVVLEKRHLHVAESVHVWYPIAQLADAPLPAPVKKLLLGVLQT 366
           QPFSHVFTHFKLH++P+QV ++ R   +AE   VWYP+A+L +APLPAPVKKLLLG L++
Sbjct: 312 QPFSHVFTHFKLHVAPFQVAMQSRSQRIAEGALVWYPVARLGEAPLPAPVKKLLLGALRS 371

Query: 367 DDLL 370
           DDLL
Sbjct: 372 DDLL 375


>gi|300310949|ref|YP_003775041.1| endonuclease III protein
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 6/149 (4%)

Query: 74  TVESLAAAPSEAVMAHWSGLGYY-TRARNLHRCAQRVTAEYGGRFPDDPELLADLPGIGR 132
           T E++     + +M +   +G Y T+A+N+    + +  E+GG+ P+  E L  LPG+GR
Sbjct: 60  TPEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGQVPESREALEALPGVGR 119

Query: 133 STAAAIAAFSYGKRAAILDGNVKRVFARVFGVEGFPGAKAVEDQLWRRAVALLPQADMES 192
            TA  +   ++G     +D ++ RV  R     G    K V D++ R+ +  +     + 
Sbjct: 120 KTANVVLNTAFGHPTIAVDTHIFRVSNRT----GLAPGKDV-DEVERKLIKFVAPEFRQD 174

Query: 193 YTQGLMDLGATLCVRGKPACDRCPLAPRC 221
               L+  G   C+  KP C  C +A  C
Sbjct: 175 AHHWLILHGRYTCIARKPQCWNCIIADLC 203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,101,702
Number of extensions: 44863
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,207,925
Effective search space: 343050700
Effective search space used: 343050700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)