BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0036.p
         (211 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313206|ref|YP_003777298.1| outer-membrane lipoprotein lolB...   205   2e-54

>gi|300313206|ref|YP_003777298.1| outer-membrane lipoprotein lolB
           precursor lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score =  205 bits (522), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/199 (51%), Positives = 134/199 (67%), Gaps = 3/199 (1%)

Query: 8   AAATGLVLLAAGCASLSPQEAKDNGPALERRYSDAIDLSGRLSVRYEQNQREEAVHGSFT 67
           A    LV L AGCA++S      N  A    Y ++I++ GR+SV+YEQ+ R +++HGSF 
Sbjct: 13  ACLVTLVALLAGCATVSQDAVPTNATAPA--YQNSIEIDGRISVQYEQDDRPQSLHGSFF 70

Query: 68  WNQSARHVVVTLLSPLGQTLATIDIKPGIAVLTQSGKPPMTATDVDILTEQALGWPLPIS 127
           W Q+A+ + + + SPLGQT+ATI++KPGIA L QSG+ P  ATDVD L  Q+LGWPLP+S
Sbjct: 71  WKQTAQELNLEMFSPLGQTVATINVKPGIATLVQSGRAPQVATDVDALAAQSLGWPLPVS 130

Query: 128 GLRDWLQGFGRGADGKLFVAQPAADTVRLTTRDGWNLSYGEWQDGAANTASNHPKRIDLA 187
           G+R WLQG G  A GK FVA+   +     TRDGW ++Y  W+  AA +    PKRIDL 
Sbjct: 131 GMRQWLQGSGIDAAGKPFVAKAGDNDASFATRDGWRVTYANWESDAA-SGQVRPKRIDLV 189

Query: 188 RETRQAGPVAIRIVIDSWK 206
           R T QAG V+IRI ID+WK
Sbjct: 190 RSTTQAGKVSIRIAIDNWK 208


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 677,388
Number of extensions: 28594
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,236,335
Effective search space: 160723550
Effective search space used: 160723550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)