BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0035.p
         (123 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313207|ref|YP_003777299.1| 4-diphosphocytidyl-2C-methyl-D-...   119   1e-28

>gi|300313207|ref|YP_003777299.1|
          4-diphosphocytidyl-2C-methyl-D-erythritol kinase
          [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  119 bits (297), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/82 (70%), Positives = 65/82 (79%)

Query: 1  MPASLFDCPAPAKLNLFLHVTGRRADGYHLLQTVFQLIDRSDALDFTVRDDGVIHRVNDI 60
          M   L  CPAPAKLNLFLHVTGRR DGYHLLQ+ FQLIDR D LDF VRDDG I R N++
Sbjct: 1  MTTILTACPAPAKLNLFLHVTGRRPDGYHLLQSAFQLIDRCDTLDFAVRDDGRIIRTNEV 60

Query: 61 PGVPADTDLVVRAARLLQAAGG 82
           GVPA++DLV+RAA LL+ A G
Sbjct: 61 LGVPAESDLVIRAAHLLRDAAG 82


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 377,435
Number of extensions: 12107
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 49
Effective length of database: 1,269,480
Effective search space: 62204520
Effective search space used: 62204520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)