BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0030.p
         (595 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313210|ref|YP_003777302.1| protease with the C-terminal PD...   907   0.0  

>gi|300313210|ref|YP_003777302.1| protease with the C-terminal PDZ
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 598

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/595 (72%), Positives = 497/595 (83%), Gaps = 2/595 (0%)

Query: 1   MTTPIHYSITSNDCAAHVFDITLRVDAPAADGQVFSLPAWIPGSYMIREFARNIVQLRAE 60
           M TPI Y ITS D A+H+FD+++ VD PAA+GQVFSLPAWIPGSYMIREF +NIVQLR E
Sbjct: 1   MATPIRYRITSLDPASHLFDVSVTVDTPAAEGQVFSLPAWIPGSYMIREFGKNIVQLRGE 60

Query: 61  AGGKKVALRKLDKHTWKASPCTGPLTLSYQVYAWDLSVRTAHLDQTHAFFNGTSVFLRVE 120
             G+KV ++KLDKHTW+A+PC G LTL YQVYAWDLSVRTAHLD+TH FFNGTSVFL   
Sbjct: 61  CNGRKVGVKKLDKHTWQAAPCKGALTLHYQVYAWDLSVRTAHLDRTHGFFNGTSVFLCAH 120

Query: 121 GQEQSQHVVDIRRPAGDAYKRWRVATSLSELKAKRYGFGTYVAADYDELIDHPVELGTFA 180
           G EQ +HVV++ RP G+ +KRWRVAT++SELKAKRYGFGTYVA +YDELIDHPVE+G FA
Sbjct: 121 GFEQGEHVVELVRPEGEEFKRWRVATAMSELKAKRYGFGTYVAQNYDELIDHPVEIGDFA 180

Query: 181 LATFTAHGVPHDVVITGQVPNLDLPRLSADLKKICEAQIAFFEPKSKRAPMSRYVFMTMV 240
           LATF AHGVPHDVVITG+VPNLDL RL  DLKKICEAQIAFFEP+SKRAPM RYVFMT+ 
Sbjct: 181 LATFQAHGVPHDVVITGRVPNLDLARLCEDLKKICEAQIAFFEPRSKRAPMDRYVFMTLA 240

Query: 241 VGDGYGGLEHRASTALVCARSDLPVKGKSELSDGYRTYLGLCSHEYFHSWNVKRIKPAVF 300
           VGDGYGGLEHRASTAL+CAR+DL VKGK E +DGYRTYLGLCSHEYFH+WNVKRIKPAVF
Sbjct: 241 VGDGYGGLEHRASTALICARADLSVKGKPEQTDGYRTYLGLCSHEYFHTWNVKRIKPAVF 300

Query: 301 APYDLREEGYTSLLWLFEGFTSYYDDLFLVRTGLIDEAAYLGMLAKTINGVLRGSGRRKQ 360
           APYDLR+E YTSLLWLFEGFTSYYDDLFLVRTG+ID   YL ++ KT+ GVLRG+GR+KQ
Sbjct: 301 APYDLRQENYTSLLWLFEGFTSYYDDLFLVRTGVIDTDNYLKLVGKTVTGVLRGTGRKKQ 360

Query: 361 SVAESSFDAWVKYYRQDENAPNAIVSYYTKGSLVALALDLTIRSETNGRKSLDDVMLALW 420
           SVAESSFDAWVKYYRQDENA NAIVSYYTKGSLVAL LDLTIR++T GR+SLDDVM  LW
Sbjct: 361 SVAESSFDAWVKYYRQDENASNAIVSYYTKGSLVALGLDLTIRTQTRGRRSLDDVMRGLW 420

Query: 421 QQYGRQFYSRNGGHGLGEEEAEALFEAVSGVKLKRFFDRYIRGTEDLPFAQLLPDMAIKF 480
            +YGR FY      G+ E+E  A+ E +SG  LKRF DR+IRGTED+PF  LLP   + +
Sbjct: 421 VRYGRDFYE-GKQQGVPEDEILAIMEELSGADLKRFHDRHIRGTEDVPFEDLLPAFGVAY 479

Query: 481 D-DAGKDRKPSLGLRVVRDGADAKVANVYEGGAGHRAGVSAGDKLVALDGLRVPPTGADG 539
           + +   D KP LG R+ ++G DAK+A VYEGG    AG+SAGDKLVA+DGLRVP +G DG
Sbjct: 480 EANVPADAKPWLGARIGKEGGDAKLAAVYEGGPAMLAGLSAGDKLVAIDGLRVPASGPDG 539

Query: 540 LLARYRENDVVALHVFRRDELMSFSVKLKNDDAPQTALTSEAKPAAAVRKRKSWL 594
           LLARYR ND V +H FRRDELM FSV+LK D APQ +L + AKP AA R+R +WL
Sbjct: 540 LLARYRLNDTVRIHAFRRDELMEFSVRLKADTAPQVSLQALAKPVAAARQRAAWL 594


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,937,787
Number of extensions: 83092
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 504
Effective length of database: 1,188,985
Effective search space: 599248440
Effective search space used: 599248440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)