BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0029.p
         (475 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313211|ref|YP_003777303.1| glutamate synthase small subuni...   873   0.0  

>gi|300313211|ref|YP_003777303.1| glutamate synthase small subunit
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 487

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/474 (89%), Positives = 451/474 (95%)

Query: 1   MGKVTGFMEYERLKEASEAPQSRMKHYKEFVLHLGDAEAKVQGARCMDCGIPFCNNGCPV 60
           MGK TGFMEY+RLKEASEAP +R KHYKEFVLHL DA+AK+QGARCMDCGIPFCNNGCPV
Sbjct: 1   MGKATGFMEYQRLKEASEAPAARTKHYKEFVLHLSDADAKIQGARCMDCGIPFCNNGCPV 60

Query: 61  NNIIPDWNDLVYRGDYKEALDTLHSTNNFPEFTGRICPAPCESACTLGINSDAVGIKSIE 120
           NNIIPDWNDLVYRG+YKEALDTLH TNNFPEFTGRICPAPCE+ACTLGIN+DAVGIKSIE
Sbjct: 61  NNIIPDWNDLVYRGNYKEALDTLHQTNNFPEFTGRICPAPCEAACTLGINNDAVGIKSIE 120

Query: 121 HFIIDKGWENGWVTPQPAAVKTGKKVAVVGSGPAGMAAAQQLARAGHDVTVFEKNDRVGG 180
           HFIIDKGWENGWV PQPAA+KTGKKVAVVGSGPAG+AAAQQLARAGHDVTVFEKNDRVGG
Sbjct: 121 HFIIDKGWENGWVVPQPAAIKTGKKVAVVGSGPAGLAAAQQLARAGHDVTVFEKNDRVGG 180

Query: 181 LLRYGIPDFKMEKSHIDLRVEQMQAEGVVFRTSTLVGKDFPANITNWSKETVSPDDLKKD 240
           LLRYGIPDFKMEKSHIDLRVEQM+AEGV FRT   VGKDFP  + NWSKETV+P++LKK+
Sbjct: 181 LLRYGIPDFKMEKSHIDLRVEQMKAEGVTFRTGVFVGKDFPETVNNWSKETVTPEELKKE 240

Query: 241 FDAVVIAGGAELPRDLPVPGRELKGVHFAMEFLPLQNKVNAGDKLKGQIMATDKHVVVIG 300
           FDAVVIAGGAE PRDLPVPGRELKGVHFAM+FLPLQNKVNAGDKLK QIMAT K+VVVIG
Sbjct: 241 FDAVVIAGGAESPRDLPVPGRELKGVHFAMDFLPLQNKVNAGDKLKNQIMATGKNVVVIG 300

Query: 301 GGDTGSDCVGTSNRHGAASVAQFELMPQPPETENKPMVWPYWPTKLRTSSSHEEGCDRDW 360
           GGDTGSDCVGTSNRHGAASV QFELMPQPPE+ENKP+VWPYWP KLRTSSSHEEGC RD+
Sbjct: 301 GGDTGSDCVGTSNRHGAASVTQFELMPQPPESENKPLVWPYWPIKLRTSSSHEEGCQRDF 360

Query: 361 AVATKRLEGKNGKVEKLIAARVEWKDGKMQEVPNSEFEMKADLVLLAMGFVSPVQQVLES 420
           AV TKRLEGK GKVEKLIAARVE+KDGKM EVP+SEFE+KADLVLLAMGFVSPVQQVL++
Sbjct: 361 AVTTKRLEGKGGKVEKLIAARVEFKDGKMVEVPDSEFEIKADLVLLAMGFVSPVQQVLDA 420

Query: 421 FGVDKDQRGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARS 474
           FGV+KD RGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCAR+
Sbjct: 421 FGVEKDARGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARA 474


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,471,857
Number of extensions: 60508
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 386
Effective length of database: 1,198,455
Effective search space: 462603630
Effective search space used: 462603630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)