BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0022.p
         (408 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313218|ref|YP_003777310.1| transport protein [Herbaspirill...   451   e-128

>gi|300313218|ref|YP_003777310.1| transport protein [Herbaspirillum
           seropedicae SmR1]
          Length = 412

 Score =  451 bits (1159), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/392 (61%), Positives = 294/392 (75%), Gaps = 1/392 (0%)

Query: 10  QANRKTALRIALSGLIALSVAMGIGRFAFTPLLPMMLHDQTIDLNSGGWLATSNYLGYFI 69
           Q NR  + ++ L+G++ALSVAMGIGRFAFTPLLP+MLH+ +++L  GGWLAT+NYLGYF+
Sbjct: 18  QRNR-LSWKVCLAGMVALSVAMGIGRFAFTPLLPLMLHEGSLNLQMGGWLATANYLGYFV 76

Query: 70  GALLCAFWRGLPPTRTIRAGLLAAVLLTAGMGAFHSQGLWLLLRLLSGIASALVFVYSSG 129
           GA+ CA  R     R +R GL+A +LLT GMG      LWLL+R LSG+ASA VFVY++G
Sbjct: 77  GAMACAVHRSKRGVRMLRIGLVATILLTLGMGLLQWNWLWLLMRFLSGVASAYVFVYTAG 136

Query: 130 WCLQRLAQLQLPALGGIIYSGPGLGIMLTGLSSSAMVAGGWHAAAGWMAFGLMAALLTLL 189
           WCL +L QLQ P LGG+I+ GPGLGI LTGL +  M++ GW AA GW+A+G++A  LT L
Sbjct: 137 WCLHQLTQLQRPELGGVIFCGPGLGIALTGLLTGPMISAGWVAAGGWIAYGIIALGLTAL 196

Query: 190 VWKTFRGEVDLRAGAAATGSADQGYTEPAPVTREVRWQVLAYGLAGFGYIITATFLPVIA 249
           VW+TFR +      +AAT + D    E     REV  QV+AYG+AGFGYIITATFLPVIA
Sbjct: 197 VWQTFRFDAGQGQASAATTTTDASAQESPRQKREVTVQVIAYGIAGFGYIITATFLPVIA 256

Query: 250 RQALPGSSWPDFFWPLFGLCVALGALGATRIPVHADQRRLLAISYVMQAIGVIISAILPN 309
           RQALPGS+WPD+FWP+FGL VA GA  ATR  VH DQR LL  +Y+MQA GV++S + PN
Sbjct: 257 RQALPGSAWPDYFWPIFGLSVAAGAFSATRFSVHTDQRLLLTAAYLMQAAGVLLSILFPN 316

Query: 310 EFGFALGSILLGLPFTAITLFAMREARRLRSHHAPGLMGLMTASYGIGQIAGPPLATKLV 369
            +GFAL  +LLGLPFTAITLF MREARRLR   A  LM LMTA+YGIGQIAGPPLAT LV
Sbjct: 317 AWGFALSCLLLGLPFTAITLFGMREARRLRREQASSLMALMTAAYGIGQIAGPPLATSLV 376

Query: 370 HVSGSFTPSLSIAAATLLAGAGVYGWLATRDR 401
           H SGSFTPSL +AA TL+ GA +Y  L    R
Sbjct: 377 HASGSFTPSLCVAAITLIIGAALYYRLTRTHR 408


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,215,431
Number of extensions: 52528
Number of successful extensions: 329
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 2
Length of query: 408
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 321
Effective length of database: 1,207,925
Effective search space: 387743925
Effective search space used: 387743925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)