BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0021.p
         (498 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313219|ref|YP_003777311.1| AMP nucleosidase [Herbaspirillu...   888   0.0  

>gi|300313219|ref|YP_003777311.1| AMP nucleosidase [Herbaspirillum
           seropedicae SmR1]
          Length = 502

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/498 (85%), Positives = 457/498 (91%), Gaps = 1/498 (0%)

Query: 2   TEKFTDPQAAVDRVIEIYESNTAILRDAFKLFAKGEVL-QDRVRACYPFVRITTEKVTHT 60
           TEKFTDP AA  RV+EIYE NTAILRDAF+ F+ G+ + Q RVRACYPFVRITTEK THT
Sbjct: 5   TEKFTDPDAAYARVLEIYEHNTAILRDAFRQFSSGQPMDQQRVRACYPFVRITTEKSTHT 64

Query: 61  DTRQSFGFVAGPGTYQTTLTRPTLFKNYLLSQFTLLLQNHQEPLEVGVSELPIPVHFAFA 120
           DTRQSFGFVAGPG YQTTLTRP LF  YLL+QF L+LQNH+ PLEVGVS++PIPVHFAF 
Sbjct: 65  DTRQSFGFVAGPGCYQTTLTRPKLFHQYLLAQFRLILQNHEVPLEVGVSDMPIPVHFAFP 124

Query: 121 EGIHVEGDLDPEHLRLLPDVFDLPDLAEMDDRIVNGTYEADNGGWRDGVHPLALFTGPRI 180
           EGIHVEG LDPEHLR LPD FDLPDLA MDDRI NGTYE DNG WR+G HPLALFTGPRI
Sbjct: 125 EGIHVEGSLDPEHLRTLPDHFDLPDLATMDDRIANGTYEVDNGAWREGPHPLALFTGPRI 184

Query: 181 DYSLHRLRHYTATAPQHFQRYVLFTNYAFYVDEFVRMGRELMQATDDPELRSYRQQYTAF 240
           DYSLHRLRHYTAT+P  FQRYVLFTNYAFYVDEFVR+GR LM+ TDDP+  +YR+QYTAF
Sbjct: 185 DYSLHRLRHYTATSPDQFQRYVLFTNYAFYVDEFVRLGRRLMEPTDDPDELAYRRQYTAF 244

Query: 241 VEPGNVTTPNANVEGMKGVAGSGTAPARQPQMPAYHLQRSDGSGITLVNIGVGPSNAKTI 300
           VEPGNVTT +AN EG +  A SG APARQPQMPAYHLQR+DGSGITLVNIGVGPSNAKT+
Sbjct: 245 VEPGNVTTWSANQEGAETRAASGVAPARQPQMPAYHLQRADGSGITLVNIGVGPSNAKTV 304

Query: 301 TDHIAVLRPHGWIMLGHCAGLSSSQRMGDYVLAHAYVRDDHVLDDDLPLWVPIPALAEVQ 360
           TDH+AVLRPHGW+MLGHCAGLS+SQRMGDYVLAHAYVRDDHVLDDDLPLWVPIPALAEVQ
Sbjct: 305 TDHVAVLRPHGWLMLGHCAGLSASQRMGDYVLAHAYVRDDHVLDDDLPLWVPIPALAEVQ 364

Query: 361 LALQDAVAGITQLEGYDLKRIMRTGTVASVDDRNWELRDHRTPLLRFSQSRAIALDMESA 420
           LALQDAVA IT+L+GY+LKRIMRTGTVASVDDRNWELRDHRTPLLRFSQSRAIALDMESA
Sbjct: 365 LALQDAVASITRLDGYELKRIMRTGTVASVDDRNWELRDHRTPLLRFSQSRAIALDMESA 424

Query: 421 TVAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMANRFYEQRVAQHLKIGIRALELLRNHG 480
           TVAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMAN FYEQRVAQHL+IGIRALELLRN+G
Sbjct: 425 TVAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMANTFYEQRVAQHLQIGIRALELLRNNG 484

Query: 481 VEQLHSRKLRSFGEPAFR 498
           +EQ+HSRKLRSF EPAFR
Sbjct: 485 IEQVHSRKLRSFAEPAFR 502


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,680,742
Number of extensions: 75139
Number of successful extensions: 184
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 409
Effective length of database: 1,198,455
Effective search space: 490168095
Effective search space used: 490168095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)