BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0018.p
         (333 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal Glu-tRN...   462   e-131
gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal Glu-tRN...   355   4e-99

>gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  462 bits (1189), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/275 (84%), Positives = 241/275 (87%), Gaps = 22/275 (8%)

Query: 81  FQIASENMNNDYWLKLSKRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLTVHSKKPVVI 140
            QIASENMNND WLKL KRVNTLLAQSDVDGIVITHGTDTIEETAYFLDL V SKKPVVI
Sbjct: 1   MQIASENMNNDAWLKLGKRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVI 60

Query: 141 VGSMRPSTAISADGPINLYNAVLLAGSQEAIGKGVLVTLNDQINAAREVTKTNTSTLDTF 200
           VG+MRPSTAISADGPINLYNAVLLAGS+EAIGKGVLVTLNDQINA REVTKTNTSTLDTF
Sbjct: 61  VGAMRPSTAISADGPINLYNAVLLAGSKEAIGKGVLVTLNDQINAGREVTKTNTSTLDTF 120

Query: 201 KTPELGFLGYIQGSKPFFYRQSTRKHTVDSEFDISKLDVLPQVDIVYGYANMNPIALNAF 260
           KTPELGFLGYIQGSKP+FYRQSTRK+TVD+ FDI  LD LPQVDIVYGYANMNPIALNAF
Sbjct: 121 KTPELGFLGYIQGSKPYFYRQSTRKNTVDTPFDIMNLDKLPQVDIVYGYANMNPIALNAF 180

Query: 261 VAAGAKG----------------------XKKGVVIVRASRVGQGIVARNGEADDDKLDF 298
           VAAGA+G                       KKGVVIVR+SRVGQGIVARNGEADDDKLDF
Sbjct: 181 VAAGAQGIIHAGVGDGSLNNTVVPSLTEARKKGVVIVRSSRVGQGIVARNGEADDDKLDF 240

Query: 299 VVSDTLNAQKARILLMLALTKTSDTKEIQKIFYSY 333
           VVSDTLNAQKARILLMLALTKT+DTKEIQK+F+ Y
Sbjct: 241 VVSDTLNAQKARILLMLALTKTTDTKEIQKMFWEY 275


>gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  355 bits (910), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 193/351 (54%), Positives = 246/351 (70%), Gaps = 23/351 (6%)

Query: 5   KIFGQFLILACAALVSIAHAQKLPNVMILATGGTIAGTGASSTTTVGYTAAKIGVEALID 64
           K  G  +IL+ A   S     K PNV+++ TGGTIAG GASS  T  Y +A + V+ +I 
Sbjct: 7   KKIGAVMILSLACAFSAQAQDKKPNVVVIGTGGTIAGAGASSVNTAAYQSAVVPVDKIIA 66

Query: 65  AVPELKKVANVKGEQVFQIASENMNNDYWLKLSKRVNTLLAQSDVDGIVITHGTDTIEET 124
           AVPE+ K+ANV+GEQ+FQI SE+ N++  +KL KRV+ LL Q+DVDGIVITHGTDTIEET
Sbjct: 67  AVPEISKIANVRGEQIFQIGSESFNDERLIKLGKRVSELLKQNDVDGIVITHGTDTIEET 126

Query: 125 AYFLDLTVHSKKPVVIVGSMRPSTAISADGPINLYNAVLLAGSQEAIGKGVLVTLNDQIN 184
           AYFL+L + S KPVV+VGSMRP TA+ ADG +NLY+AVL+AGS+EA GKG LV +ND+I+
Sbjct: 127 AYFLNLVLKSDKPVVVVGSMRPGTALGADGALNLYDAVLVAGSKEAAGKGTLVVMNDEIH 186

Query: 185 AAREVTKTNTSTLDTFKTPELGFLGYIQGSKPFFYRQSTRKHTVDSEFDISKLDVLPQVD 244
           + R+VTK+NT  ++TF++P  G LGY+  +K  FYR   R HT  +EFDI K+  LP+VD
Sbjct: 187 SGRDVTKSNTFKVETFRSP-YGPLGYVVENKLSFYRLPARPHTTQTEFDIDKISSLPRVD 245

Query: 245 IVYGYANMNPIALNAFVAAGAKG----------------------XKKGVVIVRASRVGQ 282
           IVY Y N++  A +AFVAAGAK                         KGV ++RASR G 
Sbjct: 246 IVYNYGNVSRTAYDAFVAAGAKAIIHDGTGNGSVAEQIVPVLQEVRSKGVQVIRASRTGS 305

Query: 283 GIVARNGEADDDKLDFVVSDTLNAQKARILLMLALTKTSDTKEIQKIFYSY 333
           G+V RNGE  DDK D+VV+D  NAQKARIL  LALTKT+D KE+QKI + Y
Sbjct: 306 GVVIRNGEQPDDKFDWVVTDDQNAQKARILAELALTKTNDPKELQKIMWKY 356


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 825,005
Number of extensions: 28962
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,212,660
Effective search space: 299527020
Effective search space used: 299527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)