BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0016.p (539 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesi... 607 e-174 gi|300312745|ref|YP_003776837.1| periplasmic glucans biosynthesi... 314 1e-86 gi|300314061|ref|YP_003778153.1| periplasmic glucan biosynthesis... 277 1e-75 >gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 607 bits (1564), Expect = e-174, Method: Compositional matrix adjust. Identities = 306/440 (69%), Positives = 345/440 (78%), Gaps = 10/440 (2%) Query: 1 MINRRTFL---SSATATAALAALGIPPEALAANRIKLGNPAPFSFDALISQVRTAAQSPY 57 M +RR FL + AAL+ALG+P ALAA I+ P PFSF LI + R A +PY Sbjct: 2 MTSRRRFLCATGATATAAALSALGLPSGALAAQGIETSAPQPFSFAQLIERARQMASTPY 61 Query: 58 KPQNKPPADILDKIDYEAHGKIKFNTDSSLFANGPGQFPVTFFHLGRFFQAPVHMYTLEG 117 +P PA ILD+IDY+AHGKI+F D + FA GPG FP+TFFHLG+FF+ PV M+ LEG Sbjct: 62 QPAAAAPAAILDRIDYDAHGKIRFKPDRAAFATGPGPFPLTFFHLGKFFRVPVRMFLLEG 121 Query: 118 SGNNA---KAREILYDESYFDMPADSPARKLPAGTPRGSGFAGFRFQESRSGDQAKLDWR 174 +G+ +ARE+ Y + YFDMPADSPA LP G SGFAGFRFQESR GDQ DWR Sbjct: 122 AGDATAPTQARELRYRDDYFDMPADSPAHALPPG----SGFAGFRFQESRLGDQQVKDWR 177 Query: 175 KNDWVAFLGASYFRAIGDLYQYGLSARGIAIDVAQAGKPEEFPNFTHFYFETPADKSDTV 234 KNDWVAFLGASYFRAIGDLYQYGLSARG+AIDVA AGK EEFP+FT F+FE A SDTV Sbjct: 178 KNDWVAFLGASYFRAIGDLYQYGLSARGVAIDVAVAGKSEEFPDFTQFFFEPGAPGSDTV 237 Query: 235 VVYAVLDGPSIVGAYKFIMRRSEDVVMDVDCALFLRQDVGRLGIAPATSMLWYSEAVKGT 294 VVYA+LDGPSI GAY+F M+R + V M++D LFLR+DV RLG+APATSM WYSE VKGT Sbjct: 238 VVYALLDGPSITGAYRFAMQRGQGVTMEIDKQLFLRRDVERLGLAPATSMYWYSETVKGT 297 Query: 295 GADWRPEVHDSDGLAIWNGNGEHIWRPLNNPARITASAFGDNNPRGFGLLQRDRNFDHYQ 354 G DWRPEVHDSDGLAIWNG GEH+WRPLNNP R AS+F D PRGFGL+QRDR+FDHY Sbjct: 298 GVDWRPEVHDSDGLAIWNGAGEHLWRPLNNPPRTIASSFADRQPRGFGLMQRDRDFDHYL 357 Query: 355 DGVHYERRPSLWVEPLGGWGEGSVQLIEIPTDDEIHDNIVAMWVPKAKAAAGSSYRLRYR 414 DGVHYERRPSLWVEPLG WGEG VQLIE+ TDDEIHDNIVAMWVPKA A AG Y+LRYR Sbjct: 358 DGVHYERRPSLWVEPLGDWGEGQVQLIELRTDDEIHDNIVAMWVPKAAARAGDRYQLRYR 417 Query: 415 LHWMKDEPFPSPLARCVATR 434 LHW + PFPS LARCVATR Sbjct: 418 LHWQSETPFPSALARCVATR 437 >gi|300312745|ref|YP_003776837.1| periplasmic glucans biosynthesis G protein [Herbaspirillum seropedicae SmR1] Length = 541 Score = 314 bits (805), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 172/396 (43%), Positives = 235/396 (59%), Gaps = 16/396 (4%) Query: 40 FSFDALISQVRTAAQSPYK-PQNKPPADILDKIDYEAHGKIKFNTDSSLFANGPGQFPVT 98 F F+ + ++ + A YK P ++ P + D + YE +I F D S + F ++ Sbjct: 55 FDFNTVAARAKALAGKSYKKPADELPKSLKD-LSYEQASQIYFRDDKSYWRAQKLPFELS 113 Query: 99 FFHLGRFFQAPVHMYTLEGSGNNAKAREILYDESYFDMPADSPARKLPAGTPRGSGFAGF 158 F HLG + P+ + + G REI ++ + FD A R + + R GFAGF Sbjct: 114 FIHLGASYTEPIKVNEVVGDA----VREIHFNPALFDYSA---TRSVDPRSLRNLGFAGF 166 Query: 159 RFQESRSGDQAKLDWRKNDWVAFLGASYFRAIGDLYQYGLSARGIAIDVAQAGKPEEFPN 218 R + + AK+ K+D + F GASYFRA+G YGLSARG+AID A EEFP Sbjct: 167 RVR--FPVNSAKV---KDDVLTFHGASYFRALGKGQSYGLSARGLAIDTALYSG-EEFPR 220 Query: 219 FTHFYFETPADKSDTVVVYAVLDGPSIVGAYKFIMRRSEDVVMDVDCALFLRQDVGRLGI 278 FT F+ E P+ +S +V+YA+LD P GAY+F+++ D VMDV L+LR +V +LGI Sbjct: 221 FTEFWLERPSAESKELVIYALLDSPRATGAYRFVLKPGADTVMDVKAQLYLRSNVTKLGI 280 Query: 279 APATSMLWYSEAVKGTGADWRPEVHDSDGLAIWNGNGEHIWRPLNNPARITASAFGDNNP 338 AP TSM + E G D+RPEVHDSDGLA+ +G GE +WRPL NP R+ ++F +NP Sbjct: 281 APLTSMFLFGENQPGPADDFRPEVHDSDGLAMQSGTGEWLWRPLVNPKRLLVTSFSFDNP 340 Query: 339 RGFGLLQRDRNFDHYQD-GVHYERRPSLWVEPLGGWGEGSVQLIEIPTDDEIHDNIVAMW 397 GFGL+QRDR+F HY+D +Y+ RPS WVEP G WG G V+L++IPT DE +DNIVA W Sbjct: 341 LGFGLMQRDRSFSHYEDLDYNYQARPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVAYW 400 Query: 398 VPKAKAAAGSSYRLRYRLHWMKDEPFPSPLARCVAT 433 +P G + + YRL W KD PLA T Sbjct: 401 IPNTLPKPGQPFNVEYRLSWQKDNEKRPPLAYVTQT 436 >gi|300314061|ref|YP_003778153.1| periplasmic glucan biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 277 bits (709), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 151/384 (39%), Positives = 221/384 (57%), Gaps = 15/384 (3%) Query: 40 FSFDALISQVRTAAQSPYKPQNKPPADILDKIDYEAHGKIKFNTDSSLFANGPGQFPVTF 99 F + +++ + A PY+ + + + + KI+ ++ + + F + F Sbjct: 23 FDLNQAVARAKDLAAKPYQKPVSNLSPTFAAMQFADYMKIQPKSEKFEWRDQKTPFKLAF 82 Query: 100 FHLGRFFQAPVHMYTLEGSGNNAKAREILYDESYFDMPADSPARKLPAGTPRGSGFAGFR 159 +H G F APV ++ + + + +++ Y F+ + A+ A G+AGFR Sbjct: 83 YHQGMQFNAPVAIHEII----DGRVQDVGYSTDRFNFGDLNLAKDSTAHL----GYAGFR 134 Query: 160 FQESRSGDQAKLDWRKNDWVAFLGASYFRAIGDLYQYGLSARGIAIDVAQAGKPEEFPNF 219 + D ++++ ++ LGASYFR IG YGLSARG+AID A EEFP+F Sbjct: 135 VVYPINRDD-----KEDEVMSVLGASYFRVIGKGQVYGLSARGLAIDTAMMSG-EEFPHF 188 Query: 220 THFYFETPADKSDTVVVYAVLDGPSIVGAYKFIMRRSEDVVMDVDCALFLRQDVGRLGIA 279 T F+ + PA + YA+LD P GAYKF + +D ++DV +FLR +VGRLGIA Sbjct: 189 TEFWIQRPAPGEKQLTFYALLDSPRATGAYKFTLTPGKDALLDVQARVFLRGEVGRLGIA 248 Query: 280 PATSMLWYSEAVKGTGADWRPEVHDSDGLAIWNGNGEHIWRPLNNPARITASAFGDNNPR 339 P TSM + + + ++RP +HDS+GLAI GNGE +WRPLN+P + S+F +NPR Sbjct: 249 PLTSMFLFGPNQQSSRRNFRPAIHDSNGLAIHTGNGEWLWRPLNDPQNVEVSSFEVSNPR 308 Query: 340 GFGLLQRDRNFDHYQD-GVHYERRPSLWVEPLGGWGEGSVQLIEIPTDDEIHDNIVAMWV 398 GFGLLQR R F Y+D Y+ RPS W+EP G WG+G+VQL+EIPT DE +DNIVA W+ Sbjct: 309 GFGLLQRGREFSAYEDLKDRYDLRPSAWIEPKGDWGKGAVQLVEIPTADETNDNIVAYWL 368 Query: 399 PKAKAAAGSSYRLRYRLHWMKDEP 422 P A G+ YR+HW DEP Sbjct: 369 PAQLPARGTPLAYDYRIHWTMDEP 392 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,681,450 Number of extensions: 76059 Number of successful extensions: 205 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 3 Length of query: 539 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 449 Effective length of database: 1,193,720 Effective search space: 535980280 Effective search space used: 535980280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)