BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0015.p
         (152 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310392|ref|YP_003774484.1| hypothetical protein Hsero_1059...   170   6e-44

>gi|300310392|ref|YP_003774484.1| hypothetical protein Hsero_1059
           [Herbaspirillum seropedicae SmR1]
          Length = 139

 Score =  170 bits (430), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 76/132 (57%), Positives = 99/132 (75%)

Query: 10  LDALAEWYVTLTRQSVRHIGQFYAPEVHFKDPFNDIRGIAAMIAVYEHMFDTTDHPHFII 69
           LD L +WY  L R S+  IG+FYAPE  FKDPFNDI+G+ ++  ++EHMF+TTD P F+I
Sbjct: 5   LDRLLQWYGALERSSLERIGEFYAPEAIFKDPFNDIKGLRSIRRIFEHMFETTDDPRFVI 64

Query: 70  HERIVAGDQAFITWVFHFGLKGKHYSIAGGTHLKFNQEGLVVLHRDYWDAAEELFQKLPV 129
            E++  GDQ F TW F F LKG+ Y++ G TH +F++ GLV  HRDYWDAAEEL+QKLP+
Sbjct: 65  LEQMGQGDQGFATWRFEFRLKGRFYTVLGATHFRFDEAGLVSEHRDYWDAAEELWQKLPL 124

Query: 130 IGGLIRWLRRLF 141
           IGG ++WLR  F
Sbjct: 125 IGGPVKWLRGKF 136


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.143    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 527,554
Number of extensions: 21514
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 75
Effective length of database: 1,255,275
Effective search space: 94145625
Effective search space used: 94145625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)