BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0014.p
         (170 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310391|ref|YP_003774483.1| 3-oxoacyl-[acyl-carrier-protein...   268   2e-73
gi|300313636|ref|YP_003777728.1| short-chain alcohol dehydrogena...    66   2e-12
gi|300309919|ref|YP_003774011.1| 3-oxoacyl-(acyl-carrier protein...    59   3e-10

>gi|300310391|ref|YP_003774483.1| 3-oxoacyl-[acyl-carrier-protein]
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 283

 Score =  268 bits (685), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 127/167 (76%), Positives = 143/167 (85%)

Query: 1   MLFCAADYRPERSWEVSDDLAEQTIKTNLVSVYSALSSVLPGMLAHGSGGIALVASVAGY 60
           ++FCAA YRPERSWEV +D AE TI+TNL SVYSAL + LP MLA GSGGIALVASVAGY
Sbjct: 115 LIFCAARYRPERSWEVQEDEAEHTIRTNLASVYSALGAALPDMLARGSGGIALVASVAGY 174

Query: 61  MGLPNASVYGPGKAALINLAEILYSDLRSKGINVYLINPGFVKTGLTEKNDFAMPAMQTP 120
           +GLP A+VYGPGKAALINLAEILYSDLR KG+NVYL+NPGFVKT LT+KNDF MPA+QTP
Sbjct: 175 VGLPGATVYGPGKAALINLAEILYSDLRPKGVNVYLVNPGFVKTDLTDKNDFTMPALQTP 234

Query: 121 AAAAVEIWKGIAEGRFEIHFPRRFTRILKLIQMLPYRWRFALFHRFL 167
             AA  IW+GI EGRFEIHFP RFT  LKL+++LP+R RF LF RFL
Sbjct: 235 QQAASAIWRGIGEGRFEIHFPLRFTAWLKLLRILPFRLRFMLFQRFL 281


>gi|300313636|ref|YP_003777728.1| short-chain alcohol dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 268

 Score = 65.9 bits (159), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 9/162 (5%)

Query: 15  EVSDDLA--EQTIKTNLVSVYSALSSVLPGMLAHGSGG-----IALVASVAGYMGLPNAS 67
           E  +DLA  E+ +  N+ + ++  +  +  M A          +  + SVAG  GLP A 
Sbjct: 103 EFQEDLAAFERILAVNVTATFATFTPFVARMKASPEAQRRRCRLVGIGSVAGIRGLPGAG 162

Query: 68  VYGPGKAALINLAEILYSDLRSKGINVYLINPGFVKTGLTEKNDFAMPAMQTPAAAAVEI 127
            Y   K+A+I+  E L  +LR+ GI V  I PG++ T +T  N + MP +      A   
Sbjct: 163 AYSASKSAVISYCESLRVELRASGIKVVTIAPGYIDTPMTRVNTYRMPFLMPVERFAARA 222

Query: 128 WKGIAEGRFEIHFPRRFTRILKLIQMLPYRWRFAL-FHRFLH 168
            + I EG      P +   + KL++MLP  W + + F R  H
Sbjct: 223 VQTIDEGVSYRVIPWQMGVVAKLLRMLP-NWLYDMAFARAPH 263


>gi|300309919|ref|YP_003774011.1| 3-oxoacyl-(acyl-carrier protein)
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score = 58.5 bits (140), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 19  DLAE--QTIKTNLVSVYSALSSVLPGMLAHGSGGIALVASVAGYMGLPNASVYGPGKAAL 76
           D+ E  + ++ NL+ V+ A  SV P M A   G I  +AS+AG  G PNAS Y   KA +
Sbjct: 99  DVGEWHRIVQVNLLGVFHACRSVTPAMRAARRGRIVNIASLAGKEGTPNASAYSAAKAGV 158

Query: 77  INLAEILYSDLRSKGINVYLINPGFVKTGL 106
           + L + L  +L   G+ V  I P  VKT L
Sbjct: 159 LALTKSLGKELAESGVLVNAIAPAAVKTAL 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 470,003
Number of extensions: 15718
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 4
Length of query: 170
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,245,805
Effective search space: 113368255
Effective search space used: 113368255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)