BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0011.p
         (426 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313019|ref|YP_003777111.1| sodium:galactoside symporter pr...   302   4e-83

>gi|300313019|ref|YP_003777111.1| sodium:galactoside symporter
           protein [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  302 bits (773), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 190/386 (49%), Positives = 244/386 (63%), Gaps = 11/386 (2%)

Query: 11  AYGLLGLPLAMSALPVYIQAPLYYSSYLGATLAGTGWVLFLARVVDTVQDPWLGQCIDKL 70
           AYGLLG PLAM+ALP+++Q P YY+S++G  LA  GWVLF AR++D +QDP  G  +D+ 
Sbjct: 12  AYGLLGAPLAMAALPLFVQIPAYYASHVGLALAPLGWVLFGARLLDMLQDPVFGHLLDR- 70

Query: 71  QGTRLHLWMMLAGALLALAFFGIWLPPASVRVSGAYLLAWLGVMLVVAYTAHSMLNIAYL 130
              R   WM +AGA+LA+AF  +W PP   + +    + WL  MLV+AY AHSML+IAYL
Sbjct: 71  SAQRQKRWMAMAGAVLAVAFVCLWKPPHDPQAA----MLWLVAMLVLAYGAHSMLSIAYL 126

Query: 131 AWGARLSEDAGGLLGASALRELMGLLGAVLASVIPGVIMASGARS-QAGFALYSGAFAVA 189
           +W +RL E     L A A RE  GL G ++ASVIP  I+A+ A    A    Y   FA  
Sbjct: 127 SWASRLPEKG---LRAVAWREAAGLAGVIVASVIPAAILAAEASQIDARITFYCAGFAAL 183

Query: 190 VAVSLAALLWLAPRWNKVAAHAGGWRSAVATMRSNPGFRRLLLPYFLNAVSVAIPATLAL 249
           + ++L  LL   P   +   H   W+SA+  +   P FR LL PY LNA+S AI ATLAL
Sbjct: 184 LGLALLVLLRQNPPPPQADGH--HWKSALRGLWETPAFRTLLPPYLLNALSAAIAATLAL 241

Query: 250 FFINDRLQAPDYAGGFLATYFISTAIGLPLWVVAAQRVGVLPAWRIGMLLAVLAFGGTVL 309
           FFI D+LQ    AG FLA YF + A+GLPLW   ++RVG +  WR  MLL+V  F G  L
Sbjct: 242 FFIEDQLQQGRLAGLFLAAYFGAAALGLPLWGALSRRVGAVACWRYAMLLSVAGFIGAAL 301

Query: 310 LGAGDVLLYGAVCVAAGLALGADLALPPVLLANVIGSNESTAAYYGVWTLLAKLALAFSG 369
           LG GD L + AVC+A G ALGADL LPPVLLA  +   ++    +G+ T+L KLALA SG
Sbjct: 302 LGPGDRLAFLAVCLATGAALGADLLLPPVLLARSVRQAQAVGVAFGILTMLGKLALALSG 361

Query: 370 LALPLLALFDYQPGMSGNAALGWTYA 395
           +ALPLLA  DY+PG   + +L   YA
Sbjct: 362 IALPLLAALDYRPGQGPSVSLPLVYA 387


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,245,351
Number of extensions: 49734
Number of successful extensions: 318
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 338
Effective length of database: 1,203,190
Effective search space: 406678220
Effective search space used: 406678220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)