BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0008.p
         (272 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310388|ref|YP_003774480.1| hypothetical protein Hsero_1055...   320   9e-89

>gi|300310388|ref|YP_003774480.1| hypothetical protein Hsero_1055
           [Herbaspirillum seropedicae SmR1]
          Length = 283

 Score =  320 bits (820), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 168/270 (62%), Positives = 193/270 (71%), Gaps = 10/270 (3%)

Query: 6   APAYIVRGQVMHERLRPAQHRFVYPVFYVRLNLARLSDANNAWFGVDRLRLMSLRTRDYG 65
           APA ++ GQVMH+RLRP  H+FVYPVF VRL+LARL++A NAWFGVDR RLM +RTRDYG
Sbjct: 10  APALLLSGQVMHQRLRPVLHKFVYPVFCVRLDLARLAEAGNAWFGVDRRRLMCVRTRDYG 69

Query: 66  PRDGSDLDGWMRAQLADAGLPCDGEIWLQTFPRLFGFVFNPVSFWLCHDSAGALRAVLAE 125
           PR+GSDL  W+R  L  AGLP DG IWLQTFPRLFGFVFNPVSF+LCHD  G LRAVLAE
Sbjct: 70  PRNGSDLMQWVRGHLQQAGLPDDGAIWLQTFPRLFGFVFNPVSFFLCHDREGRLRAVLAE 129

Query: 126 VNNTFGETHRYLLADSERKAITPDTRLVCAKAMHVSPFCEVRGSYRFRFRDT-------A 178
           VNNTFGET  YLL+   +  I   TRLVC K MHVSPFCEVRG YRFRFRD         
Sbjct: 130 VNNTFGETQHYLLSAPGQGVIDEHTRLVCDKLMHVSPFCEVRGFYRFRFRDQPRRGQADQ 189

Query: 179 TTTLIGID-YDDGADNPDSAGV--LIHTTVGGRLQAMTSAAALRALLTQPFLTFGIVAKI 235
            T  +GID YD G       G+  L+ T++GG LQ +T+A+A  AL  QP LT G+VA+I
Sbjct: 190 HTAFVGIDYYDHGQPAEVLQGLQPLMRTSIGGHLQPLTAASAFAALCAQPLLTLGVVARI 249

Query: 236 HWQAWKLWCKRVPFFRKPVRPTDSAVATAN 265
           HWQA  LW KRVP+F KP R   +   T  
Sbjct: 250 HWQALLLWRKRVPWFSKPERAAAAGPTTGK 279


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 933,371
Number of extensions: 39114
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,222,130
Effective search space: 229760440
Effective search space used: 229760440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)