BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0007.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310387|ref|YP_003774479.1| dehydrogenase [Herbaspirillum s...   438   e-124

>gi|300310387|ref|YP_003774479.1| dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 428

 Score =  438 bits (1126), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/314 (66%), Positives = 250/314 (79%), Gaps = 5/314 (1%)

Query: 1   MSPAFLGMLRDILRFNRAAESNLAASLVSPLSLEQLLAAGSYGAMFRDAYLLPMAAAIWS 60
           + PAFLGMLRDILRFNRAA +NLAA    P+SL QLL  G YGA+F DAYL+PMAAAIWS
Sbjct: 117 LQPAFLGMLRDILRFNRAAHANLAACEGRPVSLRQLLREGGYGALFSDAYLIPMAAAIWS 176

Query: 61  SAPADILQFPAATFLRFCLNHGLLQVNDRPQWRTVKGGAREYVRKITATLPAVRLNTKVV 120
           S+PADIL FPAATFLRFC+NHGLLQVN+RP+WRTV+ G+REYVR+I ATL  VRL +++ 
Sbjct: 177 SSPADILDFPAATFLRFCINHGLLQVNNRPRWRTVRNGSREYVRRIAATLDDVRLGSRLE 236

Query: 121 DVLRDDAGVTVRTHDGS---ERFDSVVFATHAPDTLRMLTDADVQERALLSAVRYQANTA 177
            V+R++ GV VR+   +   E+FD+VVFATHAP TL +L DA ++E  +LSAVRYQANTA
Sbjct: 237 SVVRNEQGVLVRSAGPAPREEQFDAVVFATHAPQTLALLQDATIEEHQVLSAVRYQANTA 296

Query: 178 YLHTDLSLMPQRRKVWSSWNYLGAASAAQDGARAVCVSYWLNQLQALPCKSAVMVTLNPF 237
           +LH+D+SLMPQR KVWS+WNYLG  S   DG+RAVCVSYWLN+LQ LPC+S V++TLNP 
Sbjct: 297 WLHSDISLMPQREKVWSAWNYLG--SRKDDGSRAVCVSYWLNRLQDLPCRSDVVLTLNPP 354

Query: 238 SPPAADKTIARFDYDHPIFDQAAISAQHTLASIQGKRRTWFAGAWTGYGFHEDGLKSALR 297
            PP     + RFDY+HP+FDQ AI AQ  L  +QG+ R WFAGAWTGYGFHEDGLKSALR
Sbjct: 355 QPPNPATVMGRFDYEHPVFDQPAIDAQRRLPHLQGRHRAWFAGAWTGYGFHEDGLKSALR 414

Query: 298 VAADFSAAPSWAKV 311
           V  DF   P WA +
Sbjct: 415 VIKDFGVLPDWASL 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.132    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 973,881
Number of extensions: 37998
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)