BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0004.p
         (509 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313249|ref|YP_003777341.1| major facilitator superfamily p...   582   e-167
gi|300311754|ref|YP_003775846.1| Bcr/CflA family drug resistance...    57   3e-09

>gi|300313249|ref|YP_003777341.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 398

 Score =  582 bits (1501), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 300/398 (75%), Positives = 347/398 (87%)

Query: 22  MSGAEVRASASLASIFALRMLGLFLILPVFAVHAKGMSGGESAAMVGLAMGIYGLAQSFG 81
           MS AEVRASASLASIF+LRMLGLFL+LPVFAVHA  + GG++  +VG+A+GIYGLAQ+FG
Sbjct: 1   MSRAEVRASASLASIFSLRMLGLFLVLPVFAVHAHSLPGGDNDTLVGIALGIYGLAQAFG 60

Query: 82  QIPFGMASDKYGRKRVIVVGLVLFALGSFVAAGAQDIGWVIAGRAIQGAGAISAAVTAFI 141
           QIP+G+ASD+YGRKR+IV+GL+LFALGSFVAA A  + W++ GRA+QG+GAISAA+TAFI
Sbjct: 61  QIPYGIASDRYGRKRIIVIGLLLFALGSFVAAAATSVIWLLVGRALQGSGAISAAITAFI 120

Query: 142 ADSTREEHRTKAMAMVGGSIGLTFALSLVASPLLYEAIGMGGIFGLTGVLALAAIGVVLF 201
           ADSTREEHRTKAMAMVG SIG+TFA+S+VASPLLY++IGMGGIFGLTGVL+L AI VV++
Sbjct: 121 ADSTREEHRTKAMAMVGASIGVTFAVSMVASPLLYKSIGMGGIFGLTGVLSLIAIAVVVW 180

Query: 202 VVPDAPMVKARRVPLGEVLRHGELMRLNFGVFALHMTQMAMFVVLPAALVQYAGLPVAEH 261
           VVP AP+V+ARRVPL EVLRHGELMRLNFGVF LH+TQ+AMF+V+P ALVQ AGLP+ EH
Sbjct: 181 VVPAAPLVQARRVPLREVLRHGELMRLNFGVFTLHLTQVAMFMVVPGALVQLAGLPLGEH 240

Query: 262 WKIYLPVVLASFIFMLPPVFIGEKRGLMKQVFVAAISLLLLVQVGMWATLAHFAAHWWVL 321
           WKIYLPVVLASF+ MLPPVF+ EK G MKQVF+ AI L+LLVQ+G WA L+H   HWW+L
Sbjct: 241 WKIYLPVVLASFVLMLPPVFVAEKYGRMKQVFLGAIGLMLLVQLGFWAVLSHPLGHWWML 300

Query: 322 VFLLFAFFIAFNILEACQPSLVSRIAPAAAKGTALGVYNTLQALGLFCGGALGGWLKQFA 381
           V LLF FF+AFNILEA QPSLVSRIAP AAKG ALGVYNTLQALGL CGGALGGW+KQ  
Sbjct: 301 VALLFLFFVAFNILEASQPSLVSRIAPPAAKGAALGVYNTLQALGLSCGGALGGWIKQNV 360

Query: 382 GAPSVFVMCAVATLTWLIIASNMKNLPRRGAQXRGRPA 419
           G   VF + AV TLTWLIIA+NMKNLPRR A   G  A
Sbjct: 361 GISEVFALSAVVTLTWLIIAANMKNLPRRSAPAAGATA 398


>gi|300311754|ref|YP_003775846.1| Bcr/CflA family drug resistance
           transporter protein [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 2/109 (1%)

Query: 74  YGLAQSFGQIPFGMASDKYGRKRVIVVGLVLFALGSFVAAGAQDIGWVIAGRAIQGAG-- 131
           Y +A +FGQ+ FG  +D YGRKR++ +GL LF+LG  ++  A ++   +A R +QG G  
Sbjct: 65  YLIAYAFGQLVFGPLADAYGRKRILALGLGLFSLGCVLSLAAPNLETFVAARVLQGFGIA 124

Query: 132 AISAAVTAFIADSTREEHRTKAMAMVGGSIGLTFALSLVASPLLYEAIG 180
           A +    A I DS   +    A   +  + GL   ++ V    L EA G
Sbjct: 125 ATNLLAKAIITDSFAGQALVHAYTYMAIAWGLAPIIAPVIGAHLQEAFG 173


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,273,031
Number of extensions: 48573
Number of successful extensions: 384
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 6
Length of query: 509
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 420
Effective length of database: 1,198,455
Effective search space: 503351100
Effective search space used: 503351100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 133 (55.8 bits)