BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0003.p
         (725 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313250|ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose tra...   527   e-150
gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein...   251   1e-67

>gi|300313250|ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose
           transferase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 584

 Score =  527 bits (1358), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 265/403 (65%), Positives = 326/403 (80%)

Query: 187 DGARVASVFFMLVTLLFVARIARAAWNEDGFLSARVLGTLALFAGTVGMIKHAHDMFTDV 246
           +GAR+ASV + LVTL+FVARIA+  WNE   LS  VLGT+ALFAG+ GMIKHAHDMFTDV
Sbjct: 112 EGARLASVLYNLVTLVFVARIAQLMWNERRVLSLPVLGTVALFAGSPGMIKHAHDMFTDV 171

Query: 247 ALVCGGAIAMYGLLHIALNEQRKTPRLSAALWFGLGVGIAEMSKGLFVPVIYAATALLVG 306
           ALV GGA+A+YGLL IALNE+R+ P  SAA WFGLGVGI +M+KGLFVP+ +AATA+ VG
Sbjct: 172 ALVTGGAMAIYGLLAIALNEERRAPSWSAAFWFGLGVGITQMTKGLFVPLTFAATAMAVG 231

Query: 307 LLVRECRCRSYLRMVGLAVLVSLPFFLIWPVLLAQHSMPLFMEWFWDNNVGRFLGFSVKK 366
           +LVR CR  SY +MVG AVLVSLPFF++WP LLAQHS+PLFMEWFWDNNVGRF GFSV K
Sbjct: 232 VLVRPCRSLSYWKMVGAAVLVSLPFFVVWPALLAQHSVPLFMEWFWDNNVGRFFGFSVYK 291

Query: 367 LGSDNDHTVIFRALTGFALPGAPLAVLAIAGGEWRKIRQPRVAIPVAFTAVCVTLLLMSA 426
           LGSDNDHTVI RAL GFALPG+ LAVLA+A G+WR+   PRVA+P+AF A+ + +L  SA
Sbjct: 292 LGSDNDHTVILRALIGFALPGSVLAVLALATGDWRQTGSPRVALPLAFAAISLAVLQSSA 351

Query: 427 TARQLYLLPLILPLCVLGSAAINRLPDWAHLGWDWFARLFFGAMTALVWTIYVISIGPVE 486
           TARQLYLLP++LPL +LG+ AI RLP+  HLGWDWF+R+ FG + A +W IYV+S  P  
Sbjct: 352 TARQLYLLPVLLPLALLGARAIARLPNAFHLGWDWFSRIAFGVLAAAIWAIYVVSSLPAA 411

Query: 487 HHHYLSYLGRWLPLGFITPLQPLALGAATMMTLGWLCCLPRLKQCGKWRGALSWFAGLTL 546
            HH++ ++G+WLPL F+TPLQPLAL AA  M++ WL  L +L+  G+WRGALSWFAG+TL
Sbjct: 412 DHHWIDFMGQWLPLNFVTPLQPLALAAAVGMSVLWLWGLGQLRLAGQWRGALSWFAGITL 471

Query: 547 MWGVTYTLLLPWGDFAKSFEYVYARLSDRLKPEWRDGDCMXDR 589
           MWG+ +TLLLPW D+ KS+E+VY  L  ++  +W+DGDCM   
Sbjct: 472 MWGLAFTLLLPWADYGKSYEFVYTDLKQQIAAQWQDGDCMASE 514


>gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein
           component [Herbaspirillum seropedicae SmR1]
          Length = 850

 Score =  251 bits (641), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 125/188 (66%), Positives = 146/188 (77%)

Query: 1   LADSLQPLASRRYSVASVQDDERVHLLVRQVAHEDGFGLASGWLTEYAPLGSTIALRLLE 60
           LA  LQPL +R YSVAS   D  V LLVRQ  HEDG GLASGWLTEYAPLG+ +  RL++
Sbjct: 645 LAQQLQPLTARSYSVASAMQDGTVQLLVRQQRHEDGLGLASGWLTEYAPLGARLQARLVD 704

Query: 61  NSNFALAPEPTPAIFIGNGSGLAGLRGHLRARIASGRRRNWLLFGERHRAHDFLYREEIE 120
           N+ FA     TPAIFIGNGSG+AGLRGHLR RI +G  RNWLLFGER+  +DFLYREE++
Sbjct: 705 NAGFAPVSADTPAIFIGNGSGMAGLRGHLRQRIHAGGTRNWLLFGERNERYDFLYREELQ 764

Query: 121 QWMQEDMLSRVDLAFSRDQAERVYVQDKLRQAADMLKAWLDEGAVLYVCGSLDGMAAAVL 180
            W+Q+  L+R+DLAFSRDQ  R+YVQD+LR+AA  L+ WLD+GAVLYVCGSLDGMAA V 
Sbjct: 765 AWLQQGQLARLDLAFSRDQEARIYVQDRLREAAGELRHWLDQGAVLYVCGSLDGMAAGVD 824

Query: 181 YVCGSLDG 188
            V  SL G
Sbjct: 825 AVLTSLLG 832


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,409,741
Number of extensions: 106129
Number of successful extensions: 390
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 3
Length of query: 725
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 633
Effective length of database: 1,184,250
Effective search space: 749630250
Effective search space used: 749630250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 134 (56.2 bits)