BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0220.p
         (125 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310502|ref|YP_003774594.1| tetraacyldisaccharide 4'-kinase...   170   3e-44

>gi|300310502|ref|YP_003774594.1| tetraacyldisaccharide 4'-kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  170 bits (430), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/128 (69%), Positives = 101/128 (78%), Gaps = 5/128 (3%)

Query: 1   MQLETDQVELLKDRACRQPLASLSVAEG---IAAVAGIGNPARFFATLEQAGLNFERVAL 57
           MQL   +   L   A R+PLA +   EG   +AA+AGIG+P RFFATL+ AGL+F R  L
Sbjct: 220 MQLLATEAVQLAPPAARKPLARMG--EGGLRLAALAGIGHPERFFATLQAAGLSFSRHPL 277

Query: 58  PDHYDFAHNPFAAMAAAVILITEKDAVKCRAIKAIKNDPRIWVVPVTARIDGALAEHIVE 117
           PDHYDFA +PFA +AA  ILITEKDAVKCRAI+AI+NDPRIWVVPVTARIDGALAEHIVE
Sbjct: 278 PDHYDFAVDPFAGLAADAILITEKDAVKCRAIEAIRNDPRIWVVPVTARIDGALAEHIVE 337

Query: 118 KLRERPIA 125
           KLRERP A
Sbjct: 338 KLRERPTA 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 323,263
Number of extensions: 9363
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,264,745
Effective search space: 63237250
Effective search space used: 63237250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)