BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0218.p
         (303 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310503|ref|YP_003774595.1| 3-deoxy-manno-octulosonate cyti...   258   5e-70
gi|300310502|ref|YP_003774594.1| tetraacyldisaccharide 4'-kinase...   192   3e-50

>gi|300310503|ref|YP_003774595.1| 3-deoxy-manno-octulosonate
           cytidylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 271

 Score =  258 bits (658), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 139/157 (88%), Positives = 147/157 (93%)

Query: 1   MSFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAALSGASRIVVATDHRDIYAACEQ 60
           MSFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAA SGA+RI+VATDH DI+AAC+ 
Sbjct: 1   MSFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAAQSGAARIIVATDHHDIHAACQA 60

Query: 61  HGIDVAMTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATAGHIKADV 120
           HG++VAMTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATA HIK  V
Sbjct: 61  HGVEVAMTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATAAHIKPGV 120

Query: 121 PMATAAHAIELLPEMFNPNVVKVVLDKEGCAMYFSRA 157
           PMATAAHAIE   + FNPNVVKVVL+KEGCAMYFSRA
Sbjct: 121 PMATAAHAIESAADAFNPNVVKVVLNKEGCAMYFSRA 157


>gi|300310502|ref|YP_003774594.1| tetraacyldisaccharide 4'-kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  192 bits (488), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 103/151 (68%), Positives = 117/151 (77%), Gaps = 8/151 (5%)

Query: 159 RDFTVCNVGA---AGKAPAGAFAMQLETDQVELLKDRACRQPLASLSVAEG---IAAVAG 212
           RDF+V NVG+   AG APAG  AMQL   +   L   A R+PLA +   EG   +AA+AG
Sbjct: 197 RDFSVLNVGSSGMAGAAPAGVHAMQLLATEAVQLAPPAARKPLARMG--EGGLRLAALAG 254

Query: 213 IGNPARFFATLEQAGLNFERVALPDHYDFAHNPFAAMAAAVILITEKDAVKCRAIKAIKN 272
           IG+P RFFATL+ AGL+F R  LPDHYDFA +PFA +AA  ILITEKDAVKCRAI+AI+N
Sbjct: 255 IGHPERFFATLQAAGLSFSRHPLPDHYDFAVDPFAGLAADAILITEKDAVKCRAIEAIRN 314

Query: 273 DPRIWVVPVTARIDGALAEHIVEKLRERPIA 303
           DPRIWVVPVTARIDGALAEHIVEKLRERP A
Sbjct: 315 DPRIWVVPVTARIDGALAEHIVEKLRERPTA 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 797,543
Number of extensions: 26714
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,217,395
Effective search space: 265392110
Effective search space used: 265392110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)